Variant report

Variant	rs542381581
Chromosome Location	chr6:88033278-88033279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:88031398..88035229-chr6:88037396..88042297,5	MCF-7	breast:
2	chr6:87864467..87866478-chr6:88032306..88034676,2	K562	blood:
3	chr6:88032389..88034079-chr6:88038245..88041213,2	K562	blood:

Variant related genes	Relation type
ENSG00000272008	Chromatin interaction
ENSG00000164411	Chromatin interaction
ENSG00000188994	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv823771	chr6:88032762-88039447	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88031800-88033400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:88033000-88039600	Weak transcription	GM12878-XiMat	blood
3	chr6:88033000-88043600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:88033000-88043600	Weak transcription	Fetal Intestine Small	intestine
5	chr6:88033000-88043600	Weak transcription	Spleen	Spleen
6	chr6:88033000-88049000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:88033000-88055200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:88033200-88033400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:88033200-88033800	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr6:88033200-88042800	Weak transcription	Fetal Thymus	thymus
11	chr6:88033200-88043000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:88033200-88043400	Weak transcription	Primary T cells from cord blood	blood
13	chr6:88033200-88043600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr6:88033200-88043600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:88033200-88043600	Weak transcription	Pancreas	Pancrea
16	chr6:88033200-88045200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:88033200-88045400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:88033200-88048000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr6:88033200-88056400	Weak transcription	Liver	Liver
20	chr6:88033200-88062200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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