Variant report

Variant	rs542483209
Chromosome Location	chr11:49092411-49092412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM64C-1	chr11:49092304-49092552	NONHSAT021307

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759824	chr11:48303671-49185190	Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	esv1828260	chr11:48735614-49162948	Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv427886	chr11:48850348-49185190	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv2758268	chr11:48856977-49185190	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv469956	chr11:48922645-49862647	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv897481	chr11:48987539-49111467	ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv832145	chr11:49002873-49185190	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv897482	chr11:49003921-49111467	ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv897483	chr11:49003921-49120367	ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1054955	chr11:49007476-49138758	Enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv897484	chr11:49042866-49162948	ZNF genes & repeats Enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
12	esv3507647	chr11:49072476-49105274	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
13	esv3507648	chr11:49072476-49105274	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv3497082	chr11:49077426-49105124	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
15	esv3497081	chr11:49077536-49104203	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
16	esv3497083	chr11:49077536-49104203	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv1051896	chr11:49078859-49120388	Enhancers	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
18	esv2421548	chr11:49078871-49103690	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
19	esv2760191	chr11:49078871-49103690	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv554346	chr11:49079350-49095165	Inactive region	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv8818	chr11:49081704-49098520	Enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
22	esv17649	chr11:49085333-49094076	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv442611	chr11:49087981-49103686	Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
24	nsv983012	chr11:49088073-49124095	Enhancers	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links