Variant report
| Variant | rs542698169 |
|---|---|
| Chromosome Location | chr4:92034222-92034223 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:17)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:17 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | RAD21 | chr4:92034216-92034718 | ECC-1 | luminal epithelium: | n/a | chr4:92034458-92034465 chr4:92034456-92034475 |
| 2 | RAD21 | chr4:92034182-92034810 | A549 | lung: | n/a | chr4:92034458-92034465 chr4:92034456-92034475 |
| 3 | RAD21 | chr4:92034212-92034772 | MCF-7 | breast: | n/a | chr4:92034458-92034465 chr4:92034456-92034475 |
| 4 | CTCF | chr4:92034093-92034880 | SK-N-SH | brain: | n/a | chr4:92034457-92034478 chr4:92034455-92034473 chr4:92034456-92034472 |
| 5 | SMC3 | chr4:92034182-92034910 | SK-N-SH | brain: | n/a | chr4:92034457-92034471 |
| 6 | RAD21 | chr4:92034209-92034670 | HepG2 | liver: | n/a | chr4:92034458-92034465 chr4:92034456-92034475 |
| 7 | CTCF | chr4:92034077-92034842 | A549 | lung: | n/a | chr4:92034457-92034478 chr4:92034455-92034473 chr4:92034456-92034472 |
| 8 | RAD21 | chr4:92034149-92034894 | MCF-7 | breast: | n/a | chr4:92034458-92034465 chr4:92034456-92034475 |
| 9 | RAD21 | chr4:92033855-92034909 | SK-N-SH | brain: | n/a | chr4:92034458-92034465 chr4:92034456-92034475 |
| 10 | CTCF | chr4:92034140-92034290 | GM06990 | blood: | n/a | n/a |
| 11 | RAD21 | chr4:92034044-92034802 | H1-hESC | embryonic stem cell: | n/a | chr4:92034458-92034465 chr4:92034456-92034475 |
| 12 | RAD21 | chr4:92034179-92034707 | ECC-1 | luminal epithelium: | n/a | chr4:92034458-92034465 chr4:92034456-92034475 |
| 13 | RAD21 | chr4:92034208-92034807 | H1-hESC | embryonic stem cell: | n/a | chr4:92034458-92034465 chr4:92034456-92034475 |
| 14 | E2F4 | chr4:92034126-92034368 | MCF10A-Er-Src | breast: | n/a | n/a |
| 15 | RAD21 | chr4:92034157-92034846 | HCT-116 | colon: | n/a | chr4:92034458-92034465 chr4:92034456-92034475 |
| 16 | CTCF | chr4:92034080-92034230 | GM12872 | blood: | n/a | n/a |
| 17 | RAD21 | chr4:92034192-92034726 | A549 | lung: | n/a | chr4:92034458-92034465 chr4:92034456-92034475 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000248984 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491945 | chr4:91753638-92240582 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv879559 | chr4:91918870-92152678 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv869023 | chr4:91940838-92935383 | Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | esv2757943 | chr4:91946664-92146114 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | esv2759267 | chr4:91946664-92146114 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 6 | esv1831682 | chr4:91979094-92114281 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 7 | nsv879561 | chr4:92005403-92061748 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 8 | esv3448147 | chr4:92011533-92275731 | Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 9 | nsv879562 | chr4:92023320-92114281 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 10 | nsv879563 | chr4:92028168-92114281 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 11 | nsv879564 | chr4:92033255-92184080 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:92034200-92034400 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
| 2 | chr4:92034200-92034400 | Enhancers | Fetal Kidney | kidney |
