Variant report

Variant	rs542938203
Chromosome Location	chr11:17557261-17557262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv7693	chr11:17556788-17601771	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17538400-17562200	Weak transcription	Small Intestine	intestine
2	chr11:17547200-17563200	Genic enhancers	Fetal Intestine Small	intestine
3	chr11:17553600-17561800	Weak transcription	Gastric	stomach
4	chr11:17553600-17562200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:17553800-17558200	Weak transcription	Stomach Mucosa	stomach
6	chr11:17553800-17558600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr11:17553800-17563200	Weak transcription	Colonic Mucosa	Colon
8	chr11:17555400-17560400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:17555800-17562400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:17556000-17558000	Enhancers	Hela-S3	cervix
11	chr11:17556600-17557400	Enhancers	Brain Anterior Caudate	brain
12	chr11:17556800-17557400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr11:17556800-17557600	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr11:17556800-17558800	Enhancers	Fetal Intestine Large	intestine
15	chr11:17557200-17557400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:17557200-17557800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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