Variant report

Variant	rs542994
Chromosome Location	chr11:75102697-75102698
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs477837	1.00[JPT][hapmap]
rs489691	0.81[CEU][hapmap]
rs515343	0.80[CEU][hapmap]
rs536516	0.85[CEU][hapmap]
rs546715	0.82[CEU][hapmap]
rs580077	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs598936	0.85[CEU][hapmap]
rs658573	1.00[JPT][hapmap]
rs676703	0.89[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
3	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75100200-75110200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr11:75100400-75105200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:75100400-75105400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:75100400-75106000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:75100400-75106000	Weak transcription	Spleen	Spleen
6	chr11:75100400-75106200	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:75100400-75106800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:75100400-75110400	Weak transcription	HSMMtube	muscle
9	chr11:75100600-75105400	Weak transcription	K562	blood
10	chr11:75100600-75110400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:75101200-75105800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:75101800-75103200	Enhancers	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links