Variant report

Variant	rs676703
Chromosome Location	chr11:75096063-75096064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75062671..75063185-chr11:75095269..75096113,2	MCF-7	breast:
2	chr11:75039334..75040388-chr11:75094767..75096197,10	K562	blood:
3	chr11:75040553..75041347-chr11:75095182..75096118,2	MCF-7	breast:
4	chr11:75044718..75047036-chr11:75095473..75097237,2	MCF-7	breast:
5	chr11:75094569..75097338-chr11:75239172..75241375,2	K562	blood:
6	chr11:74990481..74991855-chr11:75094739..75096203,15	MCF-7	breast:
7	chr11:75039470..75040404-chr11:75095212..75096133,5	MCF-7	breast:
8	chr11:74988985..74991037-chr11:75095518..75097314,2	MCF-7	breast:
9	chr11:75062452..75064201-chr11:75095709..75098520,2	K562	blood:
10	chr11:75062740..75066296-chr11:75093335..75097226,4	MCF-7	breast:
11	chr11:74990165..74992866-chr11:75095168..75097303,2	K562	blood:
12	chr11:74959388..74960290-chr11:75095266..75096170,2	K562	blood:
13	chr11:75090671..75094563-chr11:75095690..75099742,4	K562	blood:
14	chr11:75053451..75054305-chr11:75095287..75096102,2	MCF-7	breast:
15	chr11:74990813..74992698-chr11:75094997..75096233,28	K562	blood:
16	chr11:74959485..74960229-chr11:75095114..75096063,2	MCF-7	breast:
17	chr11:75090369..75092612-chr11:75094388..75097255,4	MCF-7	breast:
18	chr11:75039130..75041813-chr11:75096060..75098275,3	MCF-7	breast:
19	chr11:75039240..75040539-chr11:75095136..75096206,19	MCF-7	breast:
20	chr11:74990939..74991793-chr11:75095291..75096538,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000137486	Chromatin interaction
ENSG00000199090	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs477837	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs506412	0.85[JPT][hapmap]
rs542994	0.89[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs580077	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs658573	0.83[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
3	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs676703	IL18BP	cis	parietal	SCAN

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75083800-75099400	Weak transcription	Right Atrium	heart
2	chr11:75087400-75099400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:75092000-75098200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:75092000-75099400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:75092200-75098000	Weak transcription	HSMMtube	muscle
6	chr11:75092200-75099400	Weak transcription	Pancreas	Pancrea
7	chr11:75092400-75098400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:75092400-75099400	Weak transcription	Colonic Mucosa	Colon
9	chr11:75092400-75099400	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:75092400-75099400	Weak transcription	Spleen	Spleen
11	chr11:75093000-75098200	Weak transcription	Lung	lung
12	chr11:75094200-75100400	Enhancers	Placenta	Placenta
13	chr11:75094400-75098400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:75094600-75098000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:75094600-75098800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:75094600-75099400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:75094600-75099400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:75094800-75097200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr11:75094800-75098200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:75094800-75099400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:75094800-75099600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:75094800-75100200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr11:75095400-75096200	Enhancers	Brain Cingulate Gyrus	brain
24	chr11:75095400-75096200	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr11:75095400-75096200	Enhancers	Osteobl	bone
26	chr11:75095400-75100000	Enhancers	HUVEC	blood vessel
27	chr11:75095600-75099600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr11:75095800-75097000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:75095800-75098000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:75095800-75098800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:75095800-75099400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:75095800-75099400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:75095800-75099400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:75095800-75099600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr11:75096000-75097000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:75096000-75097000	Weak transcription	Stomach Mucosa	stomach
37	chr11:75096000-75097000	Enhancers	Hela-S3	cervix
38	chr11:75096000-75097000	Weak transcription	HepG2	liver
39	chr11:75096000-75097200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr11:75096000-75097400	Weak transcription	Fetal Intestine Small	intestine
41	chr11:75096000-75097600	Weak transcription	Fetal Intestine Large	intestine
42	chr11:75096000-75098200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:75096000-75098200	Weak transcription	Duodenum Mucosa	Duodenum
44	chr11:75096000-75098200	Enhancers	A549	lung
45	chr11:75096000-75098200	Weak transcription	K562	blood
46	chr11:75096000-75098400	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr11:75096000-75099000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:75096000-75099400	Weak transcription	Primary hematopoietic stem cells	blood
49	chr11:75096000-75099400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr11:75096000-75099400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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