Variant report

Variant	rs543180629
Chromosome Location	chr18:14800175-14800176
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428006	chr18:14087067-14874733	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
2	nsv916419	chr18:14418522-15165372	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	esv2751771	chr18:14704694-15106727	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2756821	chr18:14741611-14865985	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv2216	chr18:14776359-14841989	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	esv1814681	chr18:14783028-14827894	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv962462	chr18:14783133-14818256	Weak transcription ZNF genes & repeats Enhancers	lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv1810142	chr18:14784020-14815826	Weak transcription ZNF genes & repeats Enhancers	lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv1810873	chr18:14784085-14827632	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv9618	chr18:14784248-14817724	ZNF genes & repeats Weak transcription Enhancers	lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv1808418	chr18:14788052-14826546	Weak transcription Enhancers ZNF genes & repeats	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv3437572	chr18:14794252-14805234	Weak transcription Enhancers ZNF genes & repeats	lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv1812410	chr18:14798777-14815324	Enhancers Weak transcription ZNF genes & repeats	lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv19254	chr18:14799518-14815415	Weak transcription	lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv498876	chr18:14799957-14811249	Weak transcription	lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:14798200-14817600	Weak transcription	Osteobl	bone
2	chr18:14799000-14817600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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