Variant report

Variant	rs543320220
Chromosome Location	chr4:59944946-59944947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr4:59944833-59945057	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr4:59944915-59945041	H1-hESC	embryonic stem cell:	n/a	n/a
3	FOXA1	chr4:59944890-59945114	HepG2	liver:	n/a	n/a
4	FOXA2	chr4:59944865-59945167	A549	lung:	n/a	n/a
5	FOXA2	chr4:59944648-59945407	A549	lung:	n/a	n/a
6	POLR2A	chr4:59944851-59945052	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000250375	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446251	chr4:59622409-59949840	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1011113	chr4:59647956-60263029	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv879045	chr4:59889898-60005301	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879046	chr4:59897952-59998696	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv879047	chr4:59900914-60005301	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv829946	chr4:59913771-60083867	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv4352	chr4:59925782-59966004	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2635604	chr4:59943518-59950966	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
9	nsv435802	chr4:59943864-59950587	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
10	nsv513133	chr4:59944205-59952101	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
11	esv3418409	chr4:59944215-59950904	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
12	esv7384	chr4:59944327-59950849	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
13	esv2145547	chr4:59944370-59950792	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
14	esv3465293	chr4:59944429-59950690	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
15	esv3523092	chr4:59944451-59950703	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
16	esv3523095	chr4:59944453-59950687	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
17	esv3523091	chr4:59944454-59952224	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	esv3523089	chr4:59944479-59950634	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
19	esv3465294	chr4:59944484-59950669	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
20	esv3465295	chr4:59944493-59950646	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
21	esv3465296	chr4:59944499-59950621	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
22	esv3523094	chr4:59944501-59950651	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
23	esv3523093	chr4:59944503-59950650	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
24	esv3422416	chr4:59944521-59950621	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
25	esv3465298	chr4:59944546-59950606	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
26	esv3523090	chr4:59944558-59950601	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
27	nsv499042	chr4:59944559-59950608	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
28	esv3465299	chr4:59944560-59950608	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
29	esv3523097	chr4:59944560-59950608	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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