Variant report

Variant	rs543505516
Chromosome Location	chr6:131019560-131019561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:130643524..130644551-chr6:131018759..131019797,15	MCF-7	breast:
2	chr6:131019021..131019768-chr6:131080914..131081754,2	MCF-7	breast:
3	chr6:130614261..130615556-chr6:131018820..131019730,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv522019	chr6:131017953-131019627	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2584437	chr6:131019361-131020770	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131017600-131019600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:131017600-131019600	Enhancers	Osteobl	bone
3	chr6:131017800-131019600	Enhancers	Primary T cells from cord blood	blood
4	chr6:131017800-131019600	Enhancers	NHDF-Ad	bronchial
5	chr6:131018000-131019600	Enhancers	Dnd41	blood
6	chr6:131018000-131020800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:131018200-131019600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:131018200-131019600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:131018200-131019600	Enhancers	NH-A	brain
10	chr6:131018400-131019600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr6:131018400-131029200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:131019000-131019600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:131019200-131019800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:131019200-131021200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:131019200-131022400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:131019200-131023000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:131019200-131023000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:131019200-131023000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr6:131019400-131019600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:131019400-131019600	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr6:131019400-131020800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr6:131019400-131022800	Weak transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links