Variant report

Variant	rs543657769
Chromosome Location	chr11:71316288-71316289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:138)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:138 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:71316180-71316330	GM12874	blood:	n/a	n/a
2	CTCF	chr11:71316260-71316410	GM12865	blood:	n/a	n/a
3	CTCF	chr11:71316260-71316550	HepG2	liver:	n/a	n/a
4	CTCF	chr11:71316180-71316330	AoAF	blood vessel:	n/a	n/a
5	CTCF	chr11:71315989-71316451	K562	blood:	n/a	n/a
6	PAX5	chr11:71315778-71316599	GM12878	blood:	n/a	n/a
7	RAD21	chr11:71316167-71316403	HepG2	liver:	n/a	n/a
8	TCF12	chr11:71315807-71316419	GM12878	blood:	n/a	n/a
9	CTCF	chr11:71316200-71316350	K562	blood:	n/a	n/a
10	CTCF	chr11:71316240-71316390	Hela-S3	cervix:	n/a	n/a
11	CTCF	chr11:71316108-71316342	NHEK	skin:	n/a	n/a
12	CTCF	chr11:71316200-71316350	GM12870	blood:	n/a	n/a
13	CTCF	chr11:71316126-71316329	HUVEC	blood vessel:	n/a	n/a
14	CTCF	chr11:71316200-71316350	BJ	skin:	n/a	n/a
15	CTCF	chr11:71316200-71316350	HMEC	breast:	n/a	n/a
16	CTCF	chr11:71316260-71316410	HCPEpiC	choroid plexus:	n/a	n/a
17	RAD21	chr11:71316213-71316308	K562	blood:	n/a	n/a
18	CTCF	chr11:71316260-71316410	BJ	skin:	n/a	n/a
19	CTCF	chr11:71316220-71316370	GM12869	blood:	n/a	n/a
20	CTCF	chr11:71316094-71316356	GM12892	blood:	n/a	n/a
21	CTCF	chr11:71316126-71316334	GM19239	blood:	n/a	n/a
22	CTCF	chr11:71316280-71316430	MCF-7	breast:	n/a	n/a
23	CTCF	chr11:71316109-71316362	GM13976	blood:	n/a	n/a
24	CTCF	chr11:71316260-71316410	HRE	kidney:	n/a	n/a
25	BCL11A	chr11:71316096-71316292	GM12878	blood:	n/a	n/a
26	CTCF	chr11:71316280-71316430	GM12867	blood:	n/a	n/a
27	USF1	chr11:71316019-71316304	HepG2	liver:	n/a	n/a
28	CTCF	chr11:71316260-71316410	AG09319	gingival:	n/a	n/a
29	TCF3	chr11:71316025-71316294	GM12878	blood:	n/a	n/a
30	FOSL2	chr11:71315986-71316558	HepG2	liver:	n/a	n/a
31	CTCF	chr11:71316121-71316336	A549	lung:	n/a	n/a
32	POLR2A	chr11:71315851-71316617	GM12878	blood:	n/a	n/a
33	CTCF	chr11:71316019-71316416	A549	lung:	n/a	n/a
34	CTCF	chr11:71316260-71316410	HEEpiC	esophagus:	n/a	n/a
35	CTCF	chr11:71316240-71316390	BE2_C	brain:	n/a	n/a
36	CTCF	chr11:71316220-71316370	GM12871	blood:	n/a	n/a
37	RXRA	chr11:71316017-71316368	HepG2	liver:	n/a	n/a
38	CTCF	chr11:71316180-71316330	HUVEC	blood vessel:	n/a	n/a
39	BATF	chr11:71315927-71316371	GM12878	blood:	n/a	n/a
40	CTCF	chr11:71316090-71316382	GM13977	blood:	n/a	n/a
41	CTCF	chr11:71316260-71316410	NHEK	skin:	n/a	n/a
42	CTCF	chr11:71316082-71316375	Medullo	brain:	n/a	n/a
43	CTCF	chr11:71316260-71316410	HCT-116	colon:	n/a	n/a
44	CTCF	chr11:71316200-71316350	SAEC	small airway:	n/a	n/a
45	CTCF	chr11:71316180-71316330	GM12872	blood:	n/a	n/a
46	IRF4	chr11:71315936-71316532	GM12878	blood:	n/a	n/a
47	CTCF	chr11:71316280-71316430	GM12869	blood:	n/a	n/a
48	CTCF	chr11:71316220-71316370	GM12873	blood:	n/a	n/a
49	CTCF	chr11:71316260-71316410	GM12875	blood:	n/a	n/a
50	CTCF	chr11:71316180-71316330	Hela-S3	cervix:	n/a	n/a

No data

Variant related genes	Relation type
KRTAP5-11	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	esv3372246	chr11:71223101-71435819	Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1043207	chr11:71293875-71442666	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1037088	chr11:71293875-71538991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	esv3527986	chr11:71298409-71620955	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	esv3527987	chr11:71298409-71620955	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	nsv1036258	chr11:71299175-71523551	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
8	nsv1041027	chr11:71299175-71527896	Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	nsv1051879	chr11:71299175-71536860	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv1044041	chr11:71299175-71538991	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	esv2761682	chr11:71299175-71619923	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
12	nsv555403	chr11:71301189-71430470	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	esv3369271	chr11:71307946-71334603	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv972040	chr11:71315526-71330518	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
15	nsv897901	chr11:71316093-71441301	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
16	nsv897902	chr11:71316093-71468856	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
17	nsv897903	chr11:71316093-71523766	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
18	nsv897904	chr11:71316093-71615727	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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