Variant report

Variant	rs544095977
Chromosome Location	chr9:3466571-3466572
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:3466442..3469407-chr9:3524530..3526691,2	K562	blood:
2	chr9:3462529..3469298-chr9:3525044..3529022,8	MCF-7	breast:
3	chr9:3465058..3467363-chr9:3472646..3474184,2	K562	blood:

Variant related genes	Relation type
ENSG00000232104	Chromatin interaction
ENSG00000080298	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032921	chr9:3139007-3502815	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv539940	chr9:3139007-3502815	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv531566	chr9:3288211-3545454	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv892089	chr9:3290569-3578094	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv916259	chr9:3308176-4296711	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv1034280	chr9:3319718-3491987	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv539942	chr9:3319718-3491987	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1028815	chr9:3319718-3584455	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
9	nsv892090	chr9:3391364-3496660	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1019324	chr9:3436845-3502815	ZNF genes & repeats Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1022795	chr9:3436845-3744623	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
12	nsv892091	chr9:3459635-3508284	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv3373914	chr9:3465977-3468525	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	esv3381046	chr9:3466227-3468350	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:3432400-3467800	Weak transcription	GM12878-XiMat	blood
2	chr9:3435000-3473200	Weak transcription	Primary T cells from cord blood	blood
3	chr9:3438400-3472800	Weak transcription	Primary B cells from cord blood	blood
4	chr9:3447400-3478800	Weak transcription	Aorta	Aorta
5	chr9:3448000-3475800	Weak transcription	Fetal Intestine Small	intestine
6	chr9:3455000-3483000	Weak transcription	Fetal Thymus	thymus
7	chr9:3456200-3467600	Weak transcription	Ovary	ovary
8	chr9:3456200-3473200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr9:3458000-3467800	Weak transcription	A549	lung
10	chr9:3459400-3467600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr9:3459400-3467600	Weak transcription	Brain Anterior Caudate	brain
12	chr9:3459400-3467800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr9:3459600-3472800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:3459800-3467400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr9:3459800-3467800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:3461000-3467600	Weak transcription	Fetal Brain Male	brain
17	chr9:3461800-3471000	Weak transcription	HUVEC	blood vessel
18	chr9:3462000-3467800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr9:3463400-3467800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr9:3463600-3467600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr9:3464000-3467800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr9:3464400-3467200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:3464600-3467800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:3464600-3467800	Weak transcription	NHDF-Ad	bronchial
25	chr9:3464800-3467600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:3464800-3467800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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