Variant report

Variant	rs544609037
Chromosome Location	chr19:38356604-38356605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv833820	chr19:38190721-38414049	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1062040	chr19:38294465-38370456	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1832898	chr19:38341754-38362792	Active TSS Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1825275	chr19:38341754-38376485	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv960836	chr19:38355208-38370306	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38347400-38358000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr19:38350600-38356800	Enhancers	Fetal Brain Male	brain
3	chr19:38355200-38356800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr19:38355200-38359000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr19:38355400-38356800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr19:38355600-38356800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr19:38355600-38356800	Enhancers	NHEK	skin
8	chr19:38355600-38357200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr19:38355800-38356800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr19:38356000-38356800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr19:38356200-38357800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr19:38356200-38365600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr19:38356400-38356800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr19:38356600-38356800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr19:38356600-38356800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr19:38356600-38356800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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