Variant report

Variant	rs545010503
Chromosome Location	chr10:28374329-28374330
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28372312..28376657-chr10:28391120..28396968,5	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv831815	chr10:28235661-28407533	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv894988	chr10:28337570-28410989	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv466855	chr10:28341783-28400835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
8	nsv550284	chr10:28341783-28400835	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
9	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv1817535	chr10:28373644-28409054	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv1848511	chr10:28373644-28464753	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28341200-28377600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:28346200-28375400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:28347000-28375200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:28347000-28380400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:28347000-28381000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:28347000-28412200	Weak transcription	Left Ventricle	heart
7	chr10:28347000-28414600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:28347400-28374600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:28347400-28377000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr10:28347400-28377200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:28348000-28381200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:28349400-28376600	Weak transcription	Colon Smooth Muscle	Colon
13	chr10:28357200-28380200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr10:28364600-28375600	Weak transcription	Esophagus	oesophagus
15	chr10:28364600-28375600	Weak transcription	Fetal Stomach	stomach
16	chr10:28364600-28378800	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:28364800-28375400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr10:28364800-28375600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:28364800-28375600	Weak transcription	Aorta	Aorta
20	chr10:28364800-28376800	Weak transcription	HSMM	muscle
21	chr10:28364800-28377600	Weak transcription	Fetal Heart	heart
22	chr10:28364800-28378400	Weak transcription	HSMMtube	muscle
23	chr10:28364800-28379600	Weak transcription	Adipose Nuclei	Adipose
24	chr10:28364800-28392000	Weak transcription	Gastric	stomach
25	chr10:28364800-28416600	Weak transcription	Pancreas	Pancrea
26	chr10:28365000-28375400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr10:28365000-28375400	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr10:28365000-28379600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr10:28365200-28375400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr10:28365200-28376200	Weak transcription	Primary B cells from cord blood	blood
31	chr10:28365200-28379600	Weak transcription	HepG2	liver
32	chr10:28365200-28380200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:28365400-28375400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr10:28365400-28375400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:28365600-28375600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr10:28365800-28375600	Weak transcription	Fetal Intestine Small	intestine
37	chr10:28367400-28378800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr10:28367800-28377400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:28367800-28420200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr10:28369400-28378800	Strong transcription	Primary T cells from cord blood	blood
41	chr10:28370800-28377200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr10:28371200-28378800	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr10:28371400-28376800	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr10:28371400-28379800	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr10:28371600-28374800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:28372000-28375000	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr10:28373400-28379600	Weak transcription	Lung	lung
48	chr10:28373600-28378600	Strong transcription	Stomach Smooth Muscle	stomach
49	chr10:28373600-28378800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:28373800-28375200	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links