Variant report

Variant	rs545515114
Chromosome Location	chr11:63755466-63755467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63752288..63756029-chr11:63763681..63768717,11	MCF-7	breast:
2	chr11:63739151..63744415-chr11:63752010..63756596,9	MCF-7	breast:
3	chr11:63753400..63755949-chr11:63951622..63955787,3	K562	blood:
4	chr1:149857624..149859749-chr11:63753842..63756794,2	MCF-7	breast:
5	chr11:63684119..63685906-chr11:63753939..63756013,2	MCF-7	breast:
6	chr11:63754724..63756802-chr11:63908470..63911045,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184270	Chromatin interaction
ENSG00000167771	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000256100	Chromatin interaction
ENSG00000168439	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000167770	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000133315	Chromatin interaction
ENSG00000176340	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468590	chr11:63639881-63783352	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv555181	chr11:63639881-63783352	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv897629	chr11:63664882-63866959	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv897630	chr11:63664882-63924446	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
7	nsv897639	chr11:63691049-63844683	Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
8	esv1849906	chr11:63719273-63880383	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
9	nsv1042075	chr11:63732454-63813164	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	esv29993	chr11:63738642-63864211	Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	nsv897640	chr11:63744152-63835611	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv897641	chr11:63744152-63844683	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
13	nsv897642	chr11:63744152-63866959	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
14	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases
15	nsv897643	chr11:63754986-63844683	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
16	nsv897644	chr11:63754986-63849330	Bivalent Enhancer Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
17	nsv897645	chr11:63754986-63859751	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
18	nsv897646	chr11:63754986-64150370	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63754600-63755600	Enhancers	Spleen	Spleen
2	chr11:63754600-63758600	Weak transcription	Aorta	Aorta
3	chr11:63754800-63755600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr11:63754800-63755600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:63754800-63755600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:63754800-63755600	Enhancers	Placenta	Placenta
7	chr11:63754800-63755800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:63754800-63755800	Enhancers	Primary T cells fromperipheralblood	blood
9	chr11:63754800-63756000	Enhancers	Fetal Heart	heart
10	chr11:63754800-63756400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:63754800-63757600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:63754800-63767600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:63755000-63755600	Enhancers	Duodenum Mucosa	Duodenum
14	chr11:63755000-63755600	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr11:63755000-63755600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr11:63755000-63755600	Enhancers	Thymus	Thymus
17	chr11:63755000-63755800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:63755000-63755800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:63755000-63755800	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr11:63755000-63755800	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr11:63755000-63755800	Enhancers	Lung	lung
22	chr11:63755000-63756000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:63755000-63756000	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:63755000-63756000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr11:63755000-63756000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:63755000-63756000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr11:63755000-63756000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr11:63755000-63756200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
29	chr11:63755000-63756200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr11:63755000-63756200	Genic enhancers	Fetal Muscle Trunk	muscle
31	chr11:63755000-63766600	Weak transcription	Right Atrium	heart
32	chr11:63755000-63769000	Weak transcription	Fetal Kidney	kidney
33	chr11:63755200-63755600	Enhancers	H1 Cell Line	embryonic stem cell
34	chr11:63755200-63755600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:63755200-63755600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:63755200-63755600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:63755200-63755600	Enhancers	Fetal Brain Male	brain
38	chr11:63755200-63755600	Enhancers	Fetal Brain Female	brain
39	chr11:63755200-63755800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr11:63755200-63755800	Enhancers	Primary B cells from cord blood	blood
41	chr11:63755200-63755800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr11:63755200-63755800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:63755200-63755800	Weak transcription	Brain Anterior Caudate	brain
44	chr11:63755200-63755800	Weak transcription	Ovary	ovary
45	chr11:63755200-63755800	Weak transcription	Right Ventricle	heart
46	chr11:63755200-63755800	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr11:63755200-63756000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:63755200-63756000	Transcr. at gene 5' and 3'	Dnd41	blood
49	chr11:63755200-63756200	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:63755200-63756400	Genic enhancers	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links