Variant report

Variant	rs545779125
Chromosome Location	chr9:141042286-141042287
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:141042200-141042350	HFF	foreskin:	n/a	chr9:141042273-141042286
2	CTCF	chr9:141041938-141042383	T-47D	breast:	n/a	chr9:141042273-141042286 chr9:141042150-141042163 chr9:141042147-141042165 chr9:141042148-141042164
3	GATA2	chr9:141041957-141042312	K562	blood:	n/a	n/a
4	CTCF	chr9:141042063-141042355	A549	lung:	n/a	chr9:141042273-141042286 chr9:141042150-141042163 chr9:141042147-141042165 chr9:141042148-141042164
5	RAD21	chr9:141041985-141042288	HepG2	liver:	n/a	chr9:141042148-141042167
6	CTCF	chr9:141042180-141042330	GM06990	blood:	n/a	chr9:141042273-141042286
7	ZBTB33	chr9:141042218-141042493	K562	blood:	n/a	n/a
8	CTCF	chr9:141041954-141042390	HepG2	liver:	n/a	chr9:141042273-141042286 chr9:141042150-141042163 chr9:141042147-141042165 chr9:141042148-141042164
9	CTCF	chr9:141042072-141042288	NHEK	skin:	n/a	chr9:141042273-141042286 chr9:141042150-141042163 chr9:141042147-141042165 chr9:141042148-141042164
10	CTCF	chr9:141042160-141042310	K562	blood:	n/a	chr9:141042273-141042286
11	PAX5	chr9:141041991-141042308	GM12878	blood:	n/a	n/a
12	CTCF	chr9:141042124-141042358	HepG2	liver:	n/a	chr9:141042273-141042286 chr9:141042150-141042163 chr9:141042147-141042165 chr9:141042148-141042164
13	CTCF	chr9:141042160-141042310	GM12868	blood:	n/a	chr9:141042273-141042286
14	CTCF	chr9:141042160-141042310	HMEC	breast:	n/a	chr9:141042273-141042286
15	CTCF	chr9:141042046-141042304	LNCaP	prostate:	n/a	chr9:141042273-141042286 chr9:141042150-141042163 chr9:141042147-141042165 chr9:141042148-141042164
16	CTCF	chr9:141041997-141042346	A549	lung:	n/a	chr9:141042273-141042286 chr9:141042150-141042163 chr9:141042147-141042165 chr9:141042148-141042164
17	CTCF	chr9:141042068-141042297	LNCaP	prostate:	n/a	chr9:141042273-141042286 chr9:141042150-141042163 chr9:141042147-141042165 chr9:141042148-141042164
18	RAD21	chr9:141042047-141042327	K562	blood:	n/a	chr9:141042148-141042167
19	CTCF	chr9:141042004-141042463	K562	blood:	n/a	chr9:141042273-141042286 chr9:141042150-141042163 chr9:141042147-141042165 chr9:141042148-141042164
20	CTCF	chr9:141042180-141042330	HepG2	liver:	n/a	chr9:141042273-141042286
21	MAX	chr9:141042115-141042300	K562	blood:	n/a	n/a
22	CTCF	chr9:141042160-141042310	BE2_C	brain:	n/a	chr9:141042273-141042286
23	CTCF	chr9:141042160-141042310	NHDF-neo	bronchial:	n/a	chr9:141042273-141042286
24	ELF1	chr9:141042083-141042395	K562	blood:	n/a	chr9:141042161-141042173
25	CTCF	chr9:141042160-141042310	HVMF	connective:	n/a	chr9:141042273-141042286
26	RXRA	chr9:141041975-141042375	HepG2	liver:	n/a	chr9:141042147-141042167
27	CTCF	chr9:141042180-141042330	GM12872	blood:	n/a	chr9:141042273-141042286
28	PAX5	chr9:141042006-141042345	GM12878	blood:	n/a	n/a
29	CTCF	chr9:141041983-141042318	Medullo	brain:	n/a	chr9:141042273-141042286 chr9:141042150-141042163 chr9:141042147-141042165 chr9:141042148-141042164
30	CTCF	chr9:141042007-141042324	K562	blood:	n/a	chr9:141042273-141042286 chr9:141042150-141042163 chr9:141042147-141042165 chr9:141042148-141042164
31	CTCF	chr9:141042160-141042310	HFF-Myc	foreskin:	n/a	chr9:141042273-141042286
32	FOSL2	chr9:141041915-141042353	HepG2	liver:	n/a	n/a
33	CTCF	chr9:141041867-141042419	A549	lung:	n/a	chr9:141042273-141042286 chr9:141042150-141042163 chr9:141042147-141042165 chr9:141042148-141042164
34	CTCF	chr9:141041888-141042528	K562	blood:	n/a	chr9:141042273-141042286 chr9:141042150-141042163 chr9:141042147-141042165 chr9:141042148-141042164
35	RAD21	chr9:141041962-141042307	HepG2	liver:	n/a	chr9:141042148-141042167
36	CTCF	chr9:141042000-141042323	A549	lung:	n/a	chr9:141042273-141042286 chr9:141042150-141042163 chr9:141042147-141042165 chr9:141042148-141042164
37	GABPA	chr9:141042050-141042352	K562	blood:	n/a	chr9:141042187-141042196
38	MAX	chr9:141042052-141042368	K562	blood:	n/a	n/a
39	CTCF	chr9:141042160-141042310	HA-sp	spinal cord:	n/a	chr9:141042273-141042286
40	CTCF	chr9:141042180-141042330	HEK293	kidney:	n/a	chr9:141042273-141042286
41	CBX3	chr9:141041994-141042355	K562	blood:	n/a	n/a
42	CTCF	chr9:141042160-141042310	SAEC	small airway:	n/a	chr9:141042273-141042286
43	CTCF	chr9:141041927-141042392	T-47D	breast:	n/a	chr9:141042273-141042286 chr9:141042150-141042163 chr9:141042147-141042165 chr9:141042148-141042164
44	CTCF	chr9:141041926-141042595	K562	blood:	n/a	chr9:141042273-141042286 chr9:141042150-141042163 chr9:141042147-141042165 chr9:141042148-141042164
45	CTCF	chr9:141042180-141042330	HFF-Myc	foreskin:	n/a	chr9:141042273-141042286
46	CTCF	chr9:141042140-141042290	HRE	kidney:	n/a	chr9:141042273-141042286 chr9:141042150-141042163 chr9:141042147-141042165 chr9:141042148-141042164
47	CTCF	chr9:141042081-141042305	A549	lung:	n/a	chr9:141042273-141042286 chr9:141042150-141042163 chr9:141042147-141042165 chr9:141042148-141042164
48	PAX5	chr9:141042069-141042344	GM12878	blood:	n/a	n/a
49	CTCF	chr9:141042160-141042310	HRE	kidney:	n/a	chr9:141042273-141042286
50	CTCFL	chr9:141042127-141042296	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:122219..122922-chr9:141042181..141042681,2	MCF-7	breast:

Variant related genes	Relation type
TUBBP5	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932633	chr9:140240417-141053535	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv531665	chr9:140378700-141073897	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	n/a
3	nsv868924	chr9:140407572-141053525	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	n/a
4	nsv428228	chr9:140719304-141153431	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	n/a
5	nsv917477	chr9:140796572-141073897	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
6	nsv1041587	chr9:140878007-141091382	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
7	nsv894682	chr9:140879370-141065054	Bivalent Enhancer Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
8	nsv831764	chr9:140884246-141065853	Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
9	esv2758206	chr9:140885563-141153431	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
10	esv2759722	chr9:140885563-141153431	Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
11	nsv427854	chr9:140885563-141153431	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
12	nsv894683	chr9:140913833-141153431	Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
13	nsv1036008	chr9:140969270-141091382	Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
14	esv12511	chr9:140982248-141153370	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
15	nsv1051914	chr9:140984455-141091382	Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
16	nsv894686	chr9:140996885-141065054	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
17	nsv894687	chr9:140996885-141153431	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
18	nsv1049582	chr9:141000510-141091382	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
19	nsv1048389	chr9:141001866-141091382	Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
20	nsv1036681	chr9:141005656-141091382	ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
21	nsv1044994	chr9:141011174-141091382	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
22	nsv1051868	chr9:141012109-141091382	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
23	nsv894688	chr9:141017352-141153431	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
24	nsv972812	chr9:141026318-141088744	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
25	nsv616028	chr9:141026318-141105225	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	n/a
26	nsv894689	chr9:141026318-141153431	Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
27	nsv894690	chr9:141027939-141153431	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
28	esv2762836	chr9:141031999-141091394	Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
29	nsv8590	chr9:141035454-141131149	ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
30	esv3347919	chr9:141038881-141043779	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
31	esv3412824	chr9:141041281-141043679	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140988200-141044600	Weak transcription	Right Atrium	heart
2	chr9:141041800-141042400	Enhancers	K562	blood
3	chr9:141042200-141042400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:141042200-141042400	Enhancers	Primary B cells from peripheral blood	blood
5	chr9:141042200-141042400	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
6	chr9:141042200-141042400	Active TSS	Placenta	Placenta
7	chr9:141042200-141042600	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr9:141042200-141042600	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr9:141042200-141042600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr9:141042200-141042600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:141042200-141042600	Bivalent/Poised TSS	Fetal Stomach	stomach
12	chr9:141042200-141042600	Enhancers	Ovary	ovary
13	chr9:141042200-141042600	Active TSS	HepG2	liver

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