Variant report

Variant	rs545904067
Chromosome Location	chr11:71315864-71315865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:25)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:25 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:71315760-71315910	Hela-S3	cervix:	n/a	n/a
2	CTCF	chr11:71315800-71315950	GM12864	blood:	n/a	n/a
3	CTCF	chr11:71315780-71315930	HCM	heart:	n/a	n/a
4	PAX5	chr11:71315778-71316599	GM12878	blood:	n/a	n/a
5	TCF12	chr11:71315807-71316419	GM12878	blood:	n/a	n/a
6	CTCF	chr11:71315820-71315970	BE2_C	brain:	n/a	n/a
7	CTCF	chr11:71315846-71315972	GM19239	blood:	n/a	n/a
8	POLR2A	chr11:71315851-71316617	GM12878	blood:	n/a	n/a
9	CTCF	chr11:71315780-71315930	GM12872	blood:	n/a	n/a
10	TCF12	chr11:71315832-71316374	GM12878	blood:	n/a	n/a
11	TCF3	chr11:71315688-71316500	GM12878	blood:	n/a	n/a
12	CTCF	chr11:71315780-71315930	GM12875	blood:	n/a	n/a
13	CTCF	chr11:71315820-71316070	GM12864	blood:	n/a	n/a
14	CTCF	chr11:71315780-71315930	HFF-Myc	foreskin:	n/a	n/a
15	IRF4	chr11:71315806-71316491	GM12878	blood:	n/a	n/a
16	CTCF	chr11:71315740-71315890	AG10803	skin:	n/a	n/a
17	CTCF	chr11:71315856-71315972	Gliobla	brain:	n/a	n/a
18	CTCF	chr11:71315854-71315973	GM19238	blood:	n/a	n/a
19	CTCF	chr11:71315836-71315969	GM12878	blood:	n/a	n/a
20	CTCF	chr11:71315850-71315971	GM12892	blood:	n/a	n/a
21	CTCF	chr11:71315780-71315930	HCPEpiC	choroid plexus:	n/a	n/a
22	POU2F2	chr11:71315763-71316811	GM12878	blood:	n/a	n/a
23	CTCF	chr11:71315820-71315970	GM12868	blood:	n/a	n/a
24	CTCF	chr11:71315800-71315950	BE2_C	brain:	n/a	n/a
25	CTCF	chr11:71315859-71316532	A549	lung:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:71315863-71315913	NB4	blood:	n/a
2	chr11:71315863-71315913	HCT-116	colon:	n/a
3	chr11:71315863-71315913	MCF10A-Er-Src	breast:	n/a
4	chr11:71315863-71315913	SK-N-SH	brain:	n/a
5	chr11:71315863-71315913	NHDF-neo	bronchial:	n/a
6	chr11:71315863-71315913	HepG2	liver:	n/a
7	chr11:71315863-71315913	HEK293	kidney:	embryo
8	chr11:71315863-71315913	K562	blood:	n/a
9	chr11:71315863-71315913	GM12891	blood:	n/a
10	chr11:71315863-71315913	HRE	kidney:	n/a
11	chr11:71315863-71315913	GM06990	blood:	n/a
12	chr11:71315863-71315913	LNCaP	prostate:	n/a
13	chr11:71315863-71315913	HEEpiC	esophagus:	n/a
14	chr11:71315863-71315913	MCF-7	breast:	n/a
15	chr11:71315863-71315913	ECC-1	luminal epithelium:	n/a
16	chr11:71315863-71315913	SK-N-MC	brain:	n/a
17	chr11:71315863-71315913	AoSMC	blood vessel:	n/a
18	chr11:71315863-71315913	HMEC	breast:	n/a
19	chr11:71315863-71315913	CMK	blood:	n/a
20	chr11:71315863-71315913	PFSK-1	brain:	n/a
21	chr11:71315863-71315913	ovcar-3	ovarian:	n/a
22	chr11:71315863-71315913	HCPEpiC	choroid plexus:	n/a
23	chr11:71315863-71315913	H1-hESC	embryonic stem cell:	embryo
24	chr11:71315863-71315913	HAEpiC	amniotic membrane:	n/a
25	chr11:71315863-71315913	AG04449	skin:	fetal
26	chr11:71315863-71315913	A549	lung:	n/a
27	chr11:71315863-71315913	BE2_C	brain:	n/a
28	chr11:71315863-71315913	HIPEpiC	eye:	n/a
29	chr11:71315863-71315913	HCM	heart:	n/a
30	chr11:71315863-71315913	HUVEC	blood vessel:	n/a
31	chr11:71315863-71315913	NH-A	brain:	n/a
32	chr11:71315863-71315913	HRCEpiC	kidney:	n/a
33	chr11:71315863-71315913	Hela-S3	cervix:	n/a
34	chr11:71315863-71315913	Caco-2	colon:	n/a
35	chr11:71315863-71315913	AG09309	skin:	n/a
36	chr11:71315863-71315913	HPAEpiC	pulmonary alveolar:	n/a
37	chr11:71315863-71315913	RPTEC	kidney:	n/a
38	chr11:71315863-71315913	PrEC	prostate:	n/a
39	chr11:71315863-71315913	AG10803	skin:	n/a
40	chr11:71315863-71315913	HNPCEpiC	eye:	n/a
41	chr11:71315863-71315913	HL-60	blood:	n/a
42	chr11:71315863-71315913	GM19239	blood:	n/a
43	chr11:71315863-71315913	HCF	heart:	n/a
44	chr11:71315863-71315913	IMR90	lung:	fetal
45	chr11:71315863-71315913	SK-N-SH_RA	brain:	n/a
46	chr11:71315863-71315913	NHBE	bronchial:	n/a
47	chr11:71315863-71315913	Hepatocyte	liver:	n/a
48	chr11:71315863-71315913	Jurkat	blood:	n/a
49	chr11:71315863-71315913	PANC-1	pancreas:	n/a
50	chr11:71315863-71315913	BJ	skin:	n/a

No data

Variant related genes	Relation type
KRTAP5-11	TF binding region
KRTAP5-11	CpG island

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	esv3372246	chr11:71223101-71435819	Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1043207	chr11:71293875-71442666	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1037088	chr11:71293875-71538991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	esv3527986	chr11:71298409-71620955	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	esv3527987	chr11:71298409-71620955	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	nsv1036258	chr11:71299175-71523551	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
8	nsv1041027	chr11:71299175-71527896	Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	nsv1051879	chr11:71299175-71536860	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv1044041	chr11:71299175-71538991	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	esv2761682	chr11:71299175-71619923	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
12	nsv555403	chr11:71301189-71430470	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	esv3369271	chr11:71307946-71334603	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv972040	chr11:71315526-71330518	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71315200-71316000	Enhancers	Fetal Thymus	thymus

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