Variant report

Variant	rs546127195
Chromosome Location	chr15:77923994-77923995
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77923251..77928296-chr15:78111448..78115771,8	MCF-7	breast:
2	chr15:77399950..77400942-chr15:77923445..77924282,3	MCF-7	breast:
3	chr15:77922761..77925687-chr15:77933695..77936379,3	K562	blood:
4	chr15:77914562..77916092-chr15:77921484..77924358,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259666	Chromatin interaction
ENSG00000169783	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv904415	chr15:77845959-77943935	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv904417	chr15:77851535-77935992	Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv904418	chr15:77851535-77963887	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv904419	chr15:77897197-77943935	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv20199	chr15:77923484-77925974	Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3327337	chr15:77923947-77926345	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77921800-77924200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:77921800-77924400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
3	chr15:77922000-77924000	Bivalent Enhancer	Placenta	Placenta
4	chr15:77922200-77924000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
5	chr15:77922600-77924000	Enhancers	Fetal Lung	lung
6	chr15:77922600-77924800	Bivalent/Poised TSS	Fetal Brain Female	brain
7	chr15:77922800-77924000	Weak transcription	Right Atrium	heart
8	chr15:77923000-77924400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
9	chr15:77923000-77924400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
10	chr15:77923000-77924600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:77923000-77924600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:77923000-77924600	Bivalent Enhancer	Fetal Heart	heart
13	chr15:77923000-77927400	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr15:77923200-77924000	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:77923200-77924600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:77923200-77924600	Bivalent/Poised TSS	Fetal Kidney	kidney
17	chr15:77923200-77924600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
18	chr15:77923200-77924600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
19	chr15:77923200-77925600	Active TSS	Ovary	ovary
20	chr15:77923400-77924000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr15:77923400-77924000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
22	chr15:77923400-77924000	Active TSS	Brain Angular Gyrus	brain
23	chr15:77923400-77924000	Active TSS	Brain Cingulate Gyrus	brain
24	chr15:77923400-77924000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
25	chr15:77923400-77924200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
26	chr15:77923400-77924200	Enhancers	Pancreas	Pancrea
27	chr15:77923400-77924400	Bivalent Enhancer	Fetal Brain Male	brain
28	chr15:77923400-77924600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
29	chr15:77923400-77924800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:77923400-77924800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
31	chr15:77923400-77926000	Active TSS	Brain Anterior Caudate	brain
32	chr15:77923400-77926000	Active TSS	Brain Substantia Nigra	brain
33	chr15:77923400-77927600	Active TSS	H9 Cell Line	embryonic stem cell
34	chr15:77923600-77924000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr15:77923600-77924000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
36	chr15:77923600-77924000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr15:77923600-77924600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr15:77923600-77924600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
39	chr15:77923600-77924600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
40	chr15:77923600-77924600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
41	chr15:77923600-77926000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:77923600-77926400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:77923600-77926600	Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr15:77923800-77924000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
45	chr15:77923800-77924000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr15:77923800-77924000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
47	chr15:77923800-77924000	Bivalent/Poised TSS	Spleen	Spleen
48	chr15:77923800-77924200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
49	chr15:77923800-77924200	Bivalent Enhancer	Stomach Mucosa	stomach
50	chr15:77923800-77924400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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