Variant report

Variant	rs546173
Chromosome Location	chr6:11623628-11623629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4574630	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs490280	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs491225	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs515885	0.82[EUR][1000 genomes]
rs559495	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs571984	0.80[EUR][1000 genomes]
rs6935938	0.80[AFR][1000 genomes]
rs707813	0.82[EUR][1000 genomes]
rs9394184	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs546173	EDN1	cis	cerebellum	SCAN
rs546173	PIP5K1P1	cis	parietal	SCAN
rs546173	C6orf218	cis	cerebellum	SCAN
rs546173	EDN1	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11610200-11631400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:11618800-11625200	Weak transcription	HSMM	muscle
3	chr6:11618800-11627200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:11621200-11623800	Enhancers	Fetal Stomach	stomach
5	chr6:11622000-11625200	Weak transcription	HSMMtube	muscle
6	chr6:11623600-11625600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:11623600-11625600	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:11623600-11632600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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