Variant report

Variant	rs9394184
Chromosome Location	chr6:11619118-11619119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4574630	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs490280	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs491225	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs515885	0.80[EUR][1000 genomes]
rs546173	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs559495	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs707813	0.80[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs9394184	EDN1	cis	cerebellum	SCAN
rs9394184	EDN1	cis	parietal	SCAN
rs9394184	PIP5K1P1	cis	parietal	SCAN
rs9394184	C6orf218	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11610200-11631400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:11611200-11622600	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:11615600-11621400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:11616400-11619600	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:11616600-11622200	Weak transcription	Psoas Muscle	Psoas
6	chr6:11616800-11621200	Weak transcription	Fetal Stomach	stomach
7	chr6:11616800-11622200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:11616800-11622400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:11616800-11622600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:11616800-11622800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:11616800-11623000	Weak transcription	Lung	lung
12	chr6:11617000-11619600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:11617000-11619600	Weak transcription	HSMMtube	muscle
14	chr6:11618200-11619200	Enhancers	HUVEC	blood vessel
15	chr6:11618200-11619200	Enhancers	NHLF	lung
16	chr6:11618200-11621800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:11618600-11622600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:11618800-11625200	Weak transcription	HSMM	muscle
19	chr6:11618800-11627200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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