Variant report

Variant	rs546359796
Chromosome Location	chr11:65544588-65544589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65463670..65466251-chr11:65542574..65544907,2	K562	blood:
2	chr11:65477209..65479962-chr11:65544503..65546115,2	MCF-7	breast:
3	chr11:65543427..65545699-chr11:65553681..65556951,3	K562	blood:
4	chr11:65526354..65531692-chr11:65541770..65544711,4	K562	blood:
5	chr11:65544303..65548645-chr11:65657766..65659706,5	K562	blood:
6	chr11:65542929..65545137-chr11:65617761..65620123,2	K562	blood:
7	chr11:65487099..65491310-chr11:65543476..65547938,6	MCF-7	breast:
8	chr11:65382267..65385019-chr11:65543981..65545607,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000172977	Chromatin interaction
ENSG00000175602	Chromatin interaction
ENSG00000172818	Chromatin interaction
ENSG00000197136	Chromatin interaction
ENSG00000173327	Chromatin interaction
ENSG00000172922	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
2	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
3	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
4	nsv897758	chr11:65490756-65564035	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv897759	chr11:65543827-65554502	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65534200-65544600	Weak transcription	Osteobl	bone
2	chr11:65537400-65544600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr11:65537400-65544600	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:65537400-65544600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:65537400-65544800	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:65537400-65545200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr11:65537400-65546600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:65537400-65546600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:65537600-65545000	Weak transcription	Aorta	Aorta
10	chr11:65537600-65546600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr11:65537800-65546800	Weak transcription	K562	blood
12	chr11:65539600-65546600	Weak transcription	Stomach Mucosa	stomach
13	chr11:65540200-65544800	Weak transcription	HUVEC	blood vessel
14	chr11:65540600-65545800	Weak transcription	Brain Substantia Nigra	brain
15	chr11:65541200-65544600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:65541400-65544600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr11:65541800-65544800	Enhancers	Pancreas	Pancrea
18	chr11:65542000-65544800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:65542000-65546400	Strong transcription	Fetal Intestine Small	intestine
20	chr11:65542200-65545200	Strong transcription	Hela-S3	cervix
21	chr11:65542200-65545600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:65542200-65546000	Strong transcription	Brain Anterior Caudate	brain
23	chr11:65542200-65546200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:65542200-65546600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:65542200-65547000	Strong transcription	A549	lung
26	chr11:65542400-65545000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:65542400-65545200	Strong transcription	Stomach Smooth Muscle	stomach
28	chr11:65542400-65545400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:65542400-65545600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr11:65542400-65545800	Strong transcription	Brain Cingulate Gyrus	brain
31	chr11:65542400-65546200	Strong transcription	Fetal Stomach	stomach
32	chr11:65542400-65546800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:65542400-65546800	Weak transcription	Brain Angular Gyrus	brain
34	chr11:65542600-65544800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:65542600-65544800	Weak transcription	Colonic Mucosa	Colon
36	chr11:65542600-65544800	Weak transcription	Ovary	ovary
37	chr11:65542600-65547000	Weak transcription	Small Intestine	intestine
38	chr11:65542600-65547200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:65542800-65544600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr11:65542800-65545000	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr11:65542800-65546600	Strong transcription	Thymus	Thymus
42	chr11:65543000-65544600	Weak transcription	GM12878-XiMat	blood
43	chr11:65543000-65544800	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr11:65543000-65546000	Strong transcription	Primary T cells from cord blood	blood
45	chr11:65543200-65544600	Weak transcription	Lung	lung
46	chr11:65543200-65544600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr11:65543200-65544800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:65543200-65545200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:65543200-65545600	Strong transcription	Esophagus	oesophagus
50	chr11:65543200-65547000	Weak transcription	NHDF-Ad	bronchial

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