Variant report

Variant	rs546427776
Chromosome Location	chr15:57999955-57999956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv530682	chr15:57912502-58108285	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	esv3415316	chr15:57999115-58000931	Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57998200-58000000	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr15:57998200-58000000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr15:57998200-58000000	Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr15:57998200-58000000	Active TSS	Brain Substantia Nigra	brain
5	chr15:57998200-58000000	Active TSS	Colonic Mucosa	Colon
6	chr15:57998200-58000600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:57998200-58001000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:57998200-58001400	Active TSS	Fetal Kidney	kidney
9	chr15:57998400-58000000	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr15:57998400-58000000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:57998400-58000000	Active TSS	Fetal Stomach	stomach
12	chr15:57998400-58000200	Active TSS	H9 Cell Line	embryonic stem cell
13	chr15:57998400-58000200	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr15:57998400-58000200	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr15:57998400-58000200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:57998400-58000200	Active TSS	Fetal Muscle Trunk	muscle
17	chr15:57998400-58000200	Active TSS	Ovary	ovary
18	chr15:57998400-58000200	Active TSS	HSMMtube	muscle
19	chr15:57998400-58000800	Active TSS	Aorta	Aorta
20	chr15:57998400-58000800	Active TSS	Right Atrium	heart
21	chr15:57998400-58000800	Active TSS	Right Ventricle	heart
22	chr15:57998600-58000000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr15:57998600-58000000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr15:57998600-58000000	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr15:57998600-58000000	Active TSS	Placenta Amnion	Placenta Amnion
26	chr15:57998600-58000000	Active TSS	Sigmoid Colon	Sigmoid Colon
27	chr15:57998600-58000000	Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr15:57998600-58000000	Active TSS	NHLF	lung
29	chr15:57998600-58000200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:57998600-58000200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr15:57998600-58000200	Active TSS	Fetal Heart	heart
32	chr15:57998600-58000200	Active TSS	Fetal Muscle Leg	muscle
33	chr15:57998600-58000200	Active TSS	Stomach Mucosa	stomach
34	chr15:57998600-58000200	Active TSS	GM12878-XiMat	blood
35	chr15:57998600-58000200	Active TSS	NHDF-Ad	bronchial
36	chr15:57998600-58000400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
37	chr15:57998600-58000400	Active TSS	HUES48 Cell Line	embryonic stem cell
38	chr15:57998600-58000400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:57998600-58000400	Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr15:57998600-58000400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr15:57998600-58000400	Active TSS	Fetal Intestine Large	intestine
42	chr15:57998600-58000600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr15:57998600-58000600	Active TSS	Fetal Intestine Small	intestine
44	chr15:57998600-58000600	Active TSS	Left Ventricle	heart
45	chr15:57998600-58000600	Active TSS	HSMM	muscle
46	chr15:57998600-58000800	Active TSS	Psoas Muscle	Psoas
47	chr15:57998600-58000800	Active TSS	Stomach Smooth Muscle	stomach
48	chr15:57998800-58000000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr15:57998800-58000000	Active TSS	Primary T cells fromperipheralblood	blood
50	chr15:57998800-58000000	Bivalent/Poised TSS	HepG2	liver

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