Variant report

Variant	rs546499776
Chromosome Location	chr11:16112949-16112950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16083200-16116000	Weak transcription	Fetal Intestine Large	intestine
2	chr11:16089400-16117400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:16097000-16115600	Weak transcription	Psoas Muscle	Psoas
4	chr11:16098600-16137000	Weak transcription	Pancreas	Pancrea
5	chr11:16104600-16114400	Weak transcription	Liver	Liver
6	chr11:16108200-16113800	Weak transcription	Brain Germinal Matrix	brain
7	chr11:16108200-16114200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:16108400-16118400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:16112600-16113000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:16112600-16113000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:16112600-16113200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:16112600-16113200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr11:16112600-16113600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:16112600-16114200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:16112800-16113200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr11:16112800-16113400	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr11:16112800-16114200	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links