Variant report

Variant	rs546503277
Chromosome Location	chr8:86556931-86556932
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:65)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:65 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr8:86556653-86557165	HepG2	liver:	n/a	n/a
2	ZBTB33	chr8:86556608-86557888	GM12878	blood:	n/a	n/a
3	USF1	chr8:86556673-86557087	HepG2	liver:	n/a	n/a
4	SP1	chr8:86556874-86557044	HepG2	liver:	n/a	n/a
5	POLR2A	chr8:86556743-86557059	GM12878	blood:	n/a	n/a
6	TCF12	chr8:86556644-86557152	GM12878	blood:	n/a	n/a
7	SP1	chr8:86556619-86557837	GM12878	blood:	n/a	n/a
8	ZBTB33	chr8:86556625-86557835	HepG2	liver:	n/a	n/a
9	GABPA	chr8:86556633-86557777	Hela-S3	cervix:	n/a	n/a
10	HEY1	chr8:86556630-86557126	HepG2	liver:	n/a	n/a
11	POLR2A	chr8:86556717-86557166	Hela-S3	cervix:	n/a	n/a
12	FOXA1	chr8:86556610-86557872	HepG2	liver:	n/a	n/a
13	RXRA	chr8:86556717-86557148	HepG2	liver:	n/a	n/a
14	HEY1	chr8:86556642-86557155	K562	blood:	n/a	n/a
15	POU2F2	chr8:86556722-86557138	GM12878	blood:	n/a	n/a
16	SPI1	chr8:86556803-86557081	GM12878	blood:	n/a	n/a
17	ZBTB33	chr8:86556628-86557162	K562	blood:	n/a	n/a
18	EP300	chr8:86556625-86557830	GM12878	blood:	n/a	n/a
19	IRF4	chr8:86556613-86557889	GM12878	blood:	n/a	n/a
20	POLR2A	chr8:86556659-86557781	H1-hESC	embryonic stem cell:	n/a	n/a
21	BCL11A	chr8:86556646-86557544	GM12878	blood:	n/a	chr8:86557185-86557194 chr8:86557162-86557171
22	TCF12	chr8:86556722-86557812	HepG2	liver:	n/a	n/a
23	GATA2	chr8:86556623-86557817	K562	blood:	n/a	chr8:86557185-86557195
24	ZBTB33	chr8:86556672-86557132	HepG2	liver:	n/a	n/a
25	EBF1	chr8:86556642-86557146	GM12878	blood:	n/a	n/a
26	FOSL2	chr8:86556605-86557843	HepG2	liver:	n/a	n/a
27	HEY1	chr8:86556626-86557120	K562	blood:	n/a	n/a
28	SP1	chr8:86556727-86557866	HepG2	liver:	n/a	n/a
29	SPI1	chr8:86556671-86557144	K562	blood:	n/a	n/a
30	BATF	chr8:86556713-86557155	GM12878	blood:	n/a	n/a
31	JUND	chr8:86556644-86557154	HepG2	liver:	n/a	n/a
32	ZBTB33	chr8:86556613-86557837	K562	blood:	n/a	n/a
33	TAF1	chr8:86556713-86557154	Hela-S3	cervix:	n/a	n/a
34	EBF1	chr8:86556714-86557778	GM12878	blood:	n/a	n/a
35	POLR2A	chr8:86556635-86557428	GM12878	blood:	n/a	n/a
36	SP1	chr8:86556628-86557829	GM12878	blood:	n/a	n/a
37	TCF12	chr8:86556666-86557159	GM12878	blood:	n/a	n/a
38	FOSL2	chr8:86556569-86557863	HepG2	liver:	n/a	n/a
39	BCL11A	chr8:86556627-86557168	GM12878	blood:	n/a	n/a
40	PAX5	chr8:86556591-86557907	GM12878	blood:	n/a	chr8:86557185-86557194
41	SIN3AK20	chr8:86556728-86557149	HepG2	liver:	n/a	n/a
42	GABPA	chr8:86556675-86557144	Hela-S3	cervix:	n/a	n/a
43	PAX5	chr8:86556655-86557146	GM12878	blood:	n/a	n/a
44	SIX5	chr8:86556630-86557822	K562	blood:	n/a	n/a
45	RXRA	chr8:86556582-86557898	HepG2	liver:	n/a	n/a
46	SIN3AK20	chr8:86556669-86557122	HepG2	liver:	n/a	n/a
47	PBX3	chr8:86556667-86557048	GM12878	blood:	n/a	n/a
48	POU2F2	chr8:86556610-86557875	GM12878	blood:	n/a	n/a
49	TAF1	chr8:86556734-86557148	Hela-S3	cervix:	n/a	n/a
50	SIX5	chr8:86556719-86557801	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr8:86556903-86556953	H1-hESC	embryonic stem cell:	embryo
2	chr8:86556903-86556953	GM12878	blood:	n/a
3	chr8:86556903-86556953	Hela-S3	cervix:	n/a
4	chr8:86556903-86556953	LNCaP	prostate:	n/a
5	chr8:86556903-86556953	SK-N-SH_RA	brain:	n/a
6	chr8:86556903-86556953	AG09309	skin:	n/a
7	chr8:86556903-86556953	HRE	kidney:	n/a
8	chr8:86556903-86556953	GM12891	blood:	n/a
9	chr8:86556903-86556953	NHDF-neo	bronchial:	n/a
10	chr8:86556903-86556953	SK-N-SH	brain:	n/a
11	chr8:86556903-86556953	T-47D	breast:	n/a
12	chr8:86556903-86556953	HEEpiC	esophagus:	n/a
13	chr8:86556903-86556953	Jurkat	blood:	n/a
14	chr8:86556903-86556953	SKMC	muscle:	n/a
15	chr8:86556903-86556953	BE2_C	brain:	n/a
16	chr8:86556903-86556953	HAEpiC	amniotic membrane:	n/a
17	chr8:86556903-86556953	AoSMC	blood vessel:	n/a
18	chr8:86556903-86556953	HepG2	liver:	n/a
19	chr8:86556903-86556953	PFSK-1	brain:	n/a
20	chr8:86556903-86556953	HIPEpiC	eye:	n/a
21	chr8:86556903-86556953	HPAEpiC	pulmonary alveolar:	n/a
22	chr8:86556903-86556953	AG04449	skin:	fetal
23	chr8:86556903-86556953	GM12892	blood:	n/a
24	chr8:86556903-86556953	K562	blood:	n/a
25	chr8:86556903-86556953	HEK293	kidney:	embryo
26	chr8:86556903-86556953	HCF	heart:	n/a
27	chr8:86556903-86556953	NB4	blood:	n/a
28	chr8:86556903-86556953	MCF-7	breast:	n/a
29	chr8:86556903-86556953	PANC-1	pancreas:	n/a
30	chr8:86556903-86556953	NH-A	brain:	n/a
31	chr8:86556903-86556953	HMEC	breast:	n/a
32	chr8:86556903-86556953	PrEC	prostate:	n/a
33	chr8:86556903-86556953	NHBE	bronchial:	n/a
34	chr8:86556903-86556953	AG10803	skin:	n/a
35	chr8:86556903-86556953	Caco-2	colon:	n/a
36	chr8:86556903-86556953	MCF10A-Er-Src	breast:	n/a
37	chr8:86556903-86556953	U87	brain:	n/a
38	chr8:86556903-86556953	HRCEpiC	kidney:	n/a
39	chr8:86556903-86556953	ProgFib	skin:	n/a
40	chr8:86556903-86556953	GM06990	blood:	n/a
41	chr8:86556903-86556953	HCT-116	colon:	n/a
42	chr8:86556903-86556953	SK-N-MC	brain:	n/a
43	chr8:86556903-86556953	HCPEpiC	choroid plexus:	n/a
44	chr8:86556903-86556953	ECC-1	luminal epithelium:	n/a
45	chr8:86556903-86556953	HCM	heart:	n/a
46	chr8:86556903-86556953	AG04450	lung:	fetal
47	chr8:86556903-86556953	GM19239	blood:	n/a
48	chr8:86556903-86556953	Hepatocyte	liver:	n/a
49	chr8:86556903-86556953	BJ	skin:	n/a
50	chr8:86556903-86556953	NT2-D1	testis:	n/a

No data

Variant related genes	Relation type
REXO1L8P	TF binding region
REXO1L8P	CpG island

Extended variants
information (count: 62 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:62 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1804888	chr8:86263098-86986703	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv1807380	chr8:86405478-86886412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv1829254	chr8:86405478-86886412	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv1831796	chr8:86405478-86886412	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv1807498	chr8:86405478-86986703	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv1828364	chr8:86405478-86986703	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	esv1831268	chr8:86405478-86986703	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	esv1844000	chr8:86405478-86986703	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	esv1851686	chr8:86405478-86986703	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv427824	chr8:86405478-86986703	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
11	esv2758162	chr8:86405478-87055053	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
12	esv2759624	chr8:86405478-87055053	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
13	nsv428204	chr8:86405478-87312208	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
14	nsv831378	chr8:86433343-86569655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv891123	chr8:86434228-86572238	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv891125	chr8:86453838-86778025	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
17	nsv1021081	chr8:86463617-86557401	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
19	nsv1019477	chr8:86468856-86557401	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
20	nsv891128	chr8:86470188-86560123	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
21	nsv1032291	chr8:86476036-86557401	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
22	nsv891130	chr8:86490859-86572238	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
23	nsv1017417	chr8:86491767-86557401	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
24	nsv1030668	chr8:86491767-86785757	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
25	nsv891131	chr8:86501203-86560123	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
26	nsv891133	chr8:86505353-86770710	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
27	nsv1018855	chr8:86505353-86785757	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
28	nsv1016874	chr8:86510282-86557401	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
29	nsv1032292	chr8:86511775-86785757	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
30	nsv1026507	chr8:86515849-86557401	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
31	nsv611666	chr8:86515849-86557500	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
32	nsv1028757	chr8:86515849-86785757	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
33	nsv1031512	chr8:86515849-86847889	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
34	nsv891134	chr8:86518484-86809706	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
35	nsv8362	chr8:86538750-86842279	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
36	nsv442112	chr8:86539521-86557413	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
37	nsv971676	chr8:86550441-86559475	Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
38	esv1821088	chr8:86550638-86831750	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island	7 gene(s)	inside rSNPs	diseases
39	esv1813849	chr8:86551959-86840811	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	7 gene(s)	inside rSNPs	diseases
40	esv1825508	chr8:86551959-86840811	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island	7 gene(s)	inside rSNPs	diseases
41	esv1806242	chr8:86552159-86840382	ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	7 gene(s)	inside rSNPs	diseases
42	esv1827662	chr8:86552159-86840382	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers	TF binding region CpG island	7 gene(s)	inside rSNPs	diseases
43	esv1827990	chr8:86552159-86840382	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island	7 gene(s)	inside rSNPs	diseases
44	esv1849776	chr8:86552159-86840382	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island	7 gene(s)	inside rSNPs	diseases
45	esv13411	chr8:86552335-86576414	Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
46	nsv471542	chr8:86552570-86574324	ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
47	esv1814282	chr8:86553525-86840811	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers	TF binding region CpG island	7 gene(s)	inside rSNPs	diseases
48	esv1815039	chr8:86553725-86840382	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island	7 gene(s)	inside rSNPs	diseases
49	esv3386586	chr8:86553800-86576451	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
50	esv3386620	chr8:86553800-86576451	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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