Variant report

Variant	rs546649821
Chromosome Location	chr10:6018555-6018556
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:6018551..6021640-chr10:6130714..6134315,5	MCF-7	breast:
2	chr10:5931810..5933817-chr10:6018457..6020176,2	MCF-7	breast:
3	chr10:5853517..5856397-chr10:6017987..6020051,2	MCF-7	breast:
4	chr10:6018064..6021783-chr10:6129304..6132316,4	K562	blood:
5	chr10:5987354..5989797-chr10:6018047..6020538,2	MCF-7	breast:
6	chr10:6003571..6011080-chr10:6014794..6021269,11	K562	blood:
7	chr10:6018064..6019912-chr10:6129955..6132156,2	K562	blood:
8	chr10:6018278..6019533-chr10:6130531..6131243,3	MCF-7	breast:
9	chr10:5929157..5931311-chr10:6018059..6019673,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000134452	Chromatin interaction
ENSG00000134453	Chromatin interaction
ENSG00000134470	Chromatin interaction
ENSG00000272764	Chromatin interaction
ENSG00000134461	Chromatin interaction
ENSG00000057608	Chromatin interaction
ENSG00000232807	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv894810	chr10:6015595-6023466	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv894811	chr10:6016399-6022562	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv894812	chr10:6016892-6022562	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv549908	chr10:6018225-6021547	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv549909	chr10:6018248-6020101	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5986200-6018600	Weak transcription	Aorta	Aorta
2	chr10:6017400-6018800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
3	chr10:6017400-6019200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:6017600-6018600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr10:6017600-6018800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
6	chr10:6017600-6020800	Active TSS	Colonic Mucosa	Colon
7	chr10:6017800-6018600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr10:6017800-6018800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:6017800-6018800	Flanking Active TSS	Primary B cells from peripheral blood	blood
10	chr10:6017800-6018800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:6017800-6018800	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr10:6017800-6018800	Flanking Active TSS	HUVEC	blood vessel
13	chr10:6017800-6019200	Flanking Active TSS	Primary hematopoietic stem cells	blood
14	chr10:6017800-6020200	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr10:6017800-6020400	Active TSS	Brain Anterior Caudate	brain
16	chr10:6017800-6020400	Active TSS	NHDF-Ad	bronchial
17	chr10:6017800-6020800	Active TSS	Lung	lung
18	chr10:6017800-6020800	Active TSS	Rectal Smooth Muscle	rectum
19	chr10:6017800-6021000	Active TSS	Right Atrium	heart
20	chr10:6018000-6018600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:6018000-6018600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
22	chr10:6018000-6018600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr10:6018000-6018600	Bivalent Enhancer	Fetal Stomach	stomach
24	chr10:6018000-6018600	Flanking Active TSS	Hela-S3	cervix
25	chr10:6018000-6018800	Flanking Active TSS	Thymus	Thymus
26	chr10:6018000-6019000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:6018000-6019000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:6018000-6019200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:6018000-6020200	Active TSS	Primary monocytes fromperipheralblood	blood
30	chr10:6018000-6020200	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr10:6018000-6020200	Active TSS	Stomach Mucosa	stomach
32	chr10:6018000-6020200	Active TSS	Osteobl	bone
33	chr10:6018000-6020400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:6018000-6020400	Active TSS	Brain Cingulate Gyrus	brain
35	chr10:6018000-6020400	Active TSS	Brain Hippocampus Middle	brain
36	chr10:6018000-6020400	Active TSS	Small Intestine	intestine
37	chr10:6018000-6020400	Active TSS	GM12878-XiMat	blood
38	chr10:6018000-6020600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
39	chr10:6018000-6020600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:6018000-6020800	Active TSS	Colon Smooth Muscle	Colon
41	chr10:6018200-6018800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
42	chr10:6018200-6018800	Flanking Active TSS	Primary T cells from cord blood	blood
43	chr10:6018200-6018800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
44	chr10:6018200-6018800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:6018200-6018800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:6018200-6018800	Flanking Active TSS	Fetal Thymus	thymus
47	chr10:6018200-6018800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
48	chr10:6018200-6018800	Weak transcription	Spleen	Spleen
49	chr10:6018200-6019000	Flanking Active TSS	Primary B cells from cord blood	blood
50	chr10:6018200-6019000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood

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