Variant report

Variant	rs546680827
Chromosome Location	chr9:136553216-136553217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:136551308..136553495-chr9:136555046..136558031,3	MCF-7	breast:
2	chr9:136546579..136549426-chr9:136551457..136554920,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894081	chr9:136227260-136678954	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv894086	chr9:136281753-136657960	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv530972	chr9:136324358-136643044	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv870051	chr9:136459745-136656889	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv894106	chr9:136489539-136566959	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv894107	chr9:136494566-136579589	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv894108	chr9:136507473-136617292	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv894111	chr9:136522985-136563926	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv894112	chr9:136528721-136571089	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1049434	chr9:136529766-136618314	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	esv1793889	chr9:136533509-136581419	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1049281	chr9:136535471-136617805	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv894113	chr9:136538798-136586367	Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv894114	chr9:136538798-136779153	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
15	nsv428546	chr9:136541745-136720872	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
16	nsv466620	chr9:136550817-136571089	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv615689	chr9:136550817-136571089	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv469907	chr9:136552263-136600201	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136524800-136555600	Weak transcription	HSMM	muscle
2	chr9:136525000-136556800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:136530800-136561000	Weak transcription	Gastric	stomach
4	chr9:136545400-136559600	Weak transcription	Fetal Heart	heart
5	chr9:136545600-136557800	Weak transcription	Ovary	ovary
6	chr9:136545600-136567600	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:136548800-136556400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:136549000-136556200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:136549400-136555200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:136549400-136556600	Weak transcription	Brain Anterior Caudate	brain
11	chr9:136549600-136566800	Weak transcription	Spleen	Spleen
12	chr9:136549800-136554000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:136549800-136558400	Weak transcription	Fetal Thymus	thymus
14	chr9:136550000-136554400	Weak transcription	Fetal Intestine Small	intestine
15	chr9:136550000-136554600	Weak transcription	Fetal Lung	lung
16	chr9:136550000-136556000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:136550000-136559200	Weak transcription	Thymus	Thymus
18	chr9:136550000-136564800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr9:136550000-136566200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr9:136550200-136565800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr9:136550200-136567600	Weak transcription	Right Atrium	heart
22	chr9:136550400-136558200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr9:136550600-136553600	Weak transcription	Fetal Stomach	stomach
24	chr9:136550600-136558800	Weak transcription	Pancreas	Pancrea
25	chr9:136550600-136562800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr9:136550800-136555800	Weak transcription	Brain Germinal Matrix	brain
27	chr9:136550800-136563400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr9:136551000-136553400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr9:136551400-136554400	Weak transcription	HepG2	liver
30	chr9:136551400-136554800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr9:136551400-136555200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr9:136551400-136562200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr9:136551600-136554400	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr9:136551600-136556400	Weak transcription	Brain Substantia Nigra	brain
35	chr9:136552000-136554200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr9:136552000-136556400	Weak transcription	Brain Hippocampus Middle	brain
37	chr9:136552200-136554600	Weak transcription	Fetal Muscle Leg	muscle
38	chr9:136552200-136555200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr9:136552200-136556400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr9:136552200-136556400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr9:136552200-136556600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr9:136552200-136566000	Weak transcription	Lung	lung
43	chr9:136552200-136567600	Weak transcription	Fetal Kidney	kidney
44	chr9:136552400-136556400	Weak transcription	Brain Angular Gyrus	brain
45	chr9:136552400-136561600	Strong transcription	Primary T cells from cord blood	blood
46	chr9:136552800-136553400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr9:136553000-136553600	Weak transcription	Liver	Liver

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