Variant report

Variant	rs546987855
Chromosome Location	chr15:45888636-45888637
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45877258..45879705-chr15:45888357..45891193,3	MCF-7	breast:
2	chr15:45887440..45889797-chr15:45894911..45896652,2	K562	blood:

Variant related genes	Relation type
ENSG00000260170	Chromatin interaction
ENSG00000104164	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	esv3358088	chr15:45888560-45892758	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45880400-45900400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:45881000-45900200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:45881000-45908600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:45881000-45908800	Weak transcription	Esophagus	oesophagus
5	chr15:45881200-45889600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:45881200-45890200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:45881200-45895800	Weak transcription	Spleen	Spleen
8	chr15:45881200-45898000	Weak transcription	Pancreas	Pancrea
9	chr15:45881200-45899800	Weak transcription	Small Intestine	intestine
10	chr15:45881200-45900200	Weak transcription	Colonic Mucosa	Colon
11	chr15:45881200-45900200	Weak transcription	Gastric	stomach
12	chr15:45881200-45909000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:45881400-45898200	Weak transcription	HSMMtube	muscle
14	chr15:45881600-45901800	Weak transcription	Psoas Muscle	Psoas
15	chr15:45881800-45889000	Weak transcription	A549	lung
16	chr15:45881800-45891800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:45881800-45896400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:45881800-45896800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr15:45881800-45898000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr15:45881800-45898200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr15:45881800-45903400	Weak transcription	Brain Substantia Nigra	brain
22	chr15:45881800-45904800	Weak transcription	NHEK	skin
23	chr15:45882000-45889400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:45882000-45908600	Weak transcription	NHLF	lung
25	chr15:45882200-45898200	Weak transcription	HSMM	muscle
26	chr15:45883000-45898600	Weak transcription	NHDF-Ad	bronchial
27	chr15:45883000-45899000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr15:45883400-45898000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr15:45884000-45890200	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr15:45884000-45896400	Weak transcription	Brain Angular Gyrus	brain
31	chr15:45884000-45898600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr15:45884400-45889400	Strong transcription	Brain Hippocampus Middle	brain
33	chr15:45884400-45889600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr15:45884400-45889800	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr15:45884400-45889800	Strong transcription	Primary B cells from cord blood	blood
36	chr15:45884400-45889800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:45884400-45889800	Strong transcription	Dnd41	blood
38	chr15:45884400-45890000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:45884400-45890200	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr15:45884400-45890200	Strong transcription	Primary B cells from peripheral blood	blood
41	chr15:45884400-45901200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr15:45884600-45890000	Strong transcription	Fetal Lung	lung
43	chr15:45884600-45890000	Strong transcription	Placenta	Placenta
44	chr15:45884600-45890200	Strong transcription	Liver	Liver
45	chr15:45884600-45900800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr15:45884800-45890000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr15:45884800-45890000	Strong transcription	Primary hematopoietic stem cells	blood
48	chr15:45884800-45890200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:45884800-45902200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr15:45885000-45899000	Weak transcription	Rectal Smooth Muscle	rectum

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