Variant report

Variant	rs547549970
Chromosome Location	chr6:142663301-142663302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3394385	chr6:142661709-142663807	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142654200-142666400	Weak transcription	HMEC	breast
2	chr6:142654200-142668800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:142654400-142666200	Weak transcription	NHEK	skin
4	chr6:142654800-142676600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:142657400-142678800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:142657600-142665800	Weak transcription	NHLF	lung
7	chr6:142659000-142666000	Weak transcription	Liver	Liver
8	chr6:142662200-142663600	Weak transcription	A549	lung
9	chr6:142662400-142665800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:142662800-142663400	Strong transcription	HepG2	liver
11	chr6:142663200-142663400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:142663200-142663800	Enhancers	Fetal Lung	lung
13	chr6:142663200-142665600	Enhancers	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links