Variant report

Variant	rs547765877
Chromosome Location	chr20:24613374-24613375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24612466..24614630-chr20:24629800..24632618,2	MCF-7	breast:
2	chr20:24611712..24613428-chr20:24614096..24616788,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv912824	chr20:24612808-24639916	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24608600-24615000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr20:24608800-24616800	Enhancers	Brain Hippocampus Middle	brain
3	chr20:24609200-24615200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr20:24610400-24613400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr20:24610400-24613800	Weak transcription	Brain Anterior Caudate	brain
6	chr20:24610400-24615600	Weak transcription	Right Atrium	heart
7	chr20:24610600-24613800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr20:24610600-24613800	Weak transcription	Gastric	stomach
9	chr20:24610600-24613800	Weak transcription	Left Ventricle	heart
10	chr20:24610600-24613800	Weak transcription	Lung	lung
11	chr20:24610600-24615000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr20:24610600-24615600	Weak transcription	Right Ventricle	heart
13	chr20:24610800-24615600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr20:24610800-24615600	Weak transcription	Thymus	Thymus
15	chr20:24611000-24613800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr20:24611000-24615200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr20:24611000-24615400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr20:24611400-24614400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr20:24611400-24614400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr20:24611400-24615400	Weak transcription	Fetal Thymus	thymus
21	chr20:24611600-24613400	Weak transcription	Brain Substantia Nigra	brain
22	chr20:24612600-24614600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr20:24612800-24613600	Weak transcription	Aorta	Aorta
24	chr20:24612800-24614800	Weak transcription	Brain Angular Gyrus	brain
25	chr20:24613000-24615200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr20:24613200-24614000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr20:24613200-24614000	Enhancers	Brain Cingulate Gyrus	brain
28	chr20:24613200-24614200	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links