Variant report

Variant	rs548218442
Chromosome Location	chr15:92577483-92577484
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv570450	chr15:92575841-92578579	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv570451	chr15:92575841-92581290	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3311554	chr15:92576910-92579517	Weak transcription Enhancers Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3311552	chr15:92577131-92579372	Weak transcription Enhancers Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3311551	chr15:92577144-92579410	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3311550	chr15:92577172-92579368	Enhancers Weak transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3311555	chr15:92577172-92579368	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv19588	chr15:92577248-92579208	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv570452	chr15:92577382-92578579	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv570453	chr15:92577382-92578967	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv570454	chr15:92577382-92579129	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv570455	chr15:92577382-92579182	Bivalent Enhancer Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv570456	chr15:92577382-92581290	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92570600-92578000	Enhancers	Right Atrium	heart
2	chr15:92571000-92578000	Enhancers	Brain Hippocampus Middle	brain
3	chr15:92572200-92581000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:92573000-92578000	Enhancers	Brain Cingulate Gyrus	brain
5	chr15:92573200-92577800	Enhancers	Brain Substantia Nigra	brain
6	chr15:92573800-92579400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr15:92574200-92580600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:92574200-92585800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:92574600-92579400	Enhancers	Left Ventricle	heart
10	chr15:92574800-92580600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr15:92574800-92585800	Weak transcription	Pancreas	Pancrea
12	chr15:92575000-92580400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr15:92575000-92580600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr15:92575000-92580600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr15:92575200-92578000	Enhancers	Primary T cells fromperipheralblood	blood
16	chr15:92575200-92578200	Enhancers	Right Ventricle	heart
17	chr15:92575400-92580400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr15:92575400-92580800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr15:92575600-92584000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr15:92575800-92584400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr15:92576000-92583800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:92576400-92577800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:92576400-92578000	Enhancers	Spleen	Spleen
24	chr15:92576400-92578200	Enhancers	Fetal Heart	heart
25	chr15:92576600-92577600	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr15:92576600-92577800	Enhancers	Fetal Brain Male	brain
27	chr15:92576600-92577800	Enhancers	Ovary	ovary
28	chr15:92576600-92578000	Enhancers	Aorta	Aorta
29	chr15:92576600-92578000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr15:92576600-92578000	Enhancers	Lung	lung
31	chr15:92576800-92577800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr15:92576800-92580000	Weak transcription	Adipose Nuclei	Adipose
33	chr15:92576800-92580200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr15:92577000-92577800	Weak transcription	Esophagus	oesophagus
35	chr15:92577000-92578200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr15:92577000-92579000	Weak transcription	Stomach Smooth Muscle	stomach
37	chr15:92577000-92580400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr15:92577000-92586600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr15:92577200-92578400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr15:92577200-92578800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr15:92577200-92580200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr15:92577400-92577800	Weak transcription	Brain Angular Gyrus	brain
43	chr15:92577400-92578200	Enhancers	Colonic Mucosa	Colon
44	chr15:92577400-92580800	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr15:92577400-92584400	Weak transcription	Brain Anterior Caudate	brain

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