Variant report

Variant	rs548278837
Chromosome Location	chr5:117878201-117878202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:59 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027428	chr5:117072745-118036353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv537877	chr5:117072745-118036353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1067621	chr5:117102544-118036352	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv531292	chr5:117102544-118036352	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	esv2422395	chr5:117442806-117887910	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv432802	chr5:117612408-117921244	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	esv2758013	chr5:117664725-117942247	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	esv2759373	chr5:117664725-117942247	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv462422	chr5:117740545-118020706	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	nsv599529	chr5:117740545-118020706	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
11	nsv427731	chr5:117781143-118023504	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
12	nsv462423	chr5:117793509-117884766	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv599536	chr5:117793509-117884766	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv1021863	chr5:117832733-117955524	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
15	nsv462424	chr5:117843869-117955570	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
16	nsv599539	chr5:117843869-117955570	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
17	nsv462425	chr5:117843869-117967472	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
18	nsv599540	chr5:117843869-117967472	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
19	nsv599541	chr5:117869174-118049776	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
20	esv2489820	chr5:117873166-117881312	Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	inside rSNPs	diseases
21	esv3354180	chr5:117873453-117878251	ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
22	nsv599543	chr5:117873896-117880349	ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
23	esv1800184	chr5:117873896-117880670	ZNF genes & repeats Enhancers	lncRNA	n/a	inside rSNPs	diseases
24	esv3373449	chr5:117874403-117881201	Enhancers Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
25	esv3362941	chr5:117874453-117878651	ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
26	esv3471088	chr5:117875653-117880251	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
27	esv3471089	chr5:117875653-117880251	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
28	esv3432894	chr5:117876553-117879151	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
29	esv20537	chr5:117877496-117878269	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
30	esv3346201	chr5:117877503-117881301	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
31	esv1793745	chr5:117877716-117880052	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
32	esv1794352	chr5:117877716-117880052	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
33	esv1799798	chr5:117877716-117880052	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
34	nsv599545	chr5:117877716-117880298	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
35	esv1793702	chr5:117877716-117880349	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
36	esv1795219	chr5:117877716-117880349	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
37	esv1809614	chr5:117877716-117880349	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
38	esv1807686	chr5:117877716-117880400	Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
39	esv1808951	chr5:117877716-117880400	Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
40	esv1834517	chr5:117877716-117880400	Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
41	esv1835167	chr5:117877716-117880400	Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
42	esv1841845	chr5:117877716-117880400	Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
43	nsv599546	chr5:117877716-117880400	Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
44	esv1794140	chr5:117877716-117880468	Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
45	esv1795136	chr5:117877716-117880468	Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
46	nsv599547	chr5:117877716-117880468	Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
47	nsv599548	chr5:117877716-117880564	Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
48	nsv599549	chr5:117877716-117880615	ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
49	nsv599550	chr5:117877716-117880836	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
50	nsv599551	chr5:117877716-117880873	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:117875600-117878400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links