Variant report

Variant	rs548411768
Chromosome Location	chr19:37464824-37464825
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37463031..37465781-chr19:37707432..37709239,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188283	Chromatin interaction
ENSG00000245680	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv521605	chr19:37261810-37483444	ZNF genes & repeats Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
11	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
13	nsv523848	chr19:37357289-37487632	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
14	nsv833818	chr19:37427808-37602800	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
15	nsv579463	chr19:37437106-37488055	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
16	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
17	esv1828064	chr19:37463270-37467305	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
18	esv1808096	chr19:37463582-37464848	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37463200-37465000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr19:37463200-37465000	Flanking Active TSS	Stomach Smooth Muscle	stomach
3	chr19:37463200-37465200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr19:37463200-37465200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
5	chr19:37463400-37465000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr19:37463400-37465000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr19:37463400-37465000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
8	chr19:37463400-37465000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr19:37463400-37465000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr19:37463400-37465000	Active TSS	Fetal Intestine Large	intestine
11	chr19:37463400-37465000	Active TSS	Osteobl	bone
12	chr19:37463400-37465200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr19:37463400-37465200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr19:37463400-37465200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr19:37463400-37465200	Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr19:37463400-37465200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr19:37463400-37465200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr19:37463400-37465200	ZNF genes & repeats	Lung	lung
19	chr19:37463400-37465400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
20	chr19:37463400-37465400	Flanking Active TSS	Fetal Muscle Trunk	muscle
21	chr19:37463600-37465000	Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr19:37463600-37465000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr19:37463600-37465000	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr19:37463600-37465000	Active TSS	Fetal Kidney	kidney
25	chr19:37463600-37465000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr19:37463600-37465200	Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr19:37463600-37465200	Active TSS	NH-A	brain
28	chr19:37463600-37465400	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr19:37463600-37465600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
30	chr19:37463800-37465000	Active TSS	HUVEC	blood vessel
31	chr19:37463800-37465000	Active TSS	NHLF	lung
32	chr19:37463800-37465200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr19:37464000-37465200	ZNF genes & repeats	A549	lung
34	chr19:37464200-37465200	Flanking Active TSS	Colonic Mucosa	Colon
35	chr19:37464200-37465200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr19:37464400-37465000	Flanking Active TSS	Primary hematopoietic stem cells	blood
37	chr19:37464400-37465000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
38	chr19:37464400-37465000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr19:37464400-37465000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
40	chr19:37464400-37465000	Flanking Active TSS	Brain Hippocampus Middle	brain
41	chr19:37464400-37465000	Flanking Active TSS	Placenta	Placenta
42	chr19:37464400-37465000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr19:37464400-37465200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr19:37464400-37465200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr19:37464400-37465200	Flanking Active TSS	Liver	Liver
46	chr19:37464400-37465200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
47	chr19:37464400-37465400	Flanking Active TSS	Dnd41	blood
48	chr19:37464600-37465000	Active TSS	H1 Cell Line	embryonic stem cell
49	chr19:37464600-37465000	Flanking Active TSS	Primary T cells from cord blood	blood
50	chr19:37464600-37465000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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