Variant report

Variant	rs548980207
Chromosome Location	chr6:140382580-140382581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139692663..139698708-chr6:140381231..140386402,5	MCF-7	breast:
2	chr6:140376182..140378933-chr6:140380636..140382581,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3473486	chr6:140380637-140392373	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	esv3473487	chr6:140380684-140392349	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
7	esv3473488	chr6:140380690-140392319	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
8	esv3473489	chr6:140380774-140392251	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140373600-140384200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:140374200-140383800	Weak transcription	Fetal Brain Female	brain
3	chr6:140375000-140383800	Weak transcription	Brain Germinal Matrix	brain
4	chr6:140378000-140383000	Weak transcription	Psoas Muscle	Psoas
5	chr6:140379400-140383600	Enhancers	Hela-S3	cervix
6	chr6:140379800-140385200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:140380000-140385200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:140380000-140385800	Enhancers	NHDF-Ad	bronchial
9	chr6:140380200-140382600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:140380400-140383800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:140380600-140382600	Weak transcription	A549	lung
12	chr6:140380600-140386400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:140380800-140382800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:140380800-140383400	Enhancers	HMEC	breast
15	chr6:140380800-140385000	Enhancers	NHLF	lung
16	chr6:140381000-140384600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:140381000-140385200	Enhancers	HSMM	muscle
18	chr6:140381200-140383400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:140381200-140385800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr6:140381800-140383400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:140381800-140385000	Enhancers	Osteobl	bone
22	chr6:140382000-140383000	Enhancers	NH-A	brain
23	chr6:140382000-140383200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:140382000-140384400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:140382000-140384600	Enhancers	NHEK	skin
26	chr6:140382200-140383400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:140382200-140384000	Enhancers	HSMMtube	muscle
28	chr6:140382200-140384400	Enhancers	Placenta	Placenta
29	chr6:140382200-140384600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:140382200-140384600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:140382200-140384600	Enhancers	Fetal Lung	lung
32	chr6:140382400-140384800	Enhancers	Adipose Nuclei	Adipose
33	chr6:140382400-140386400	Enhancers	Placenta Amnion	Placenta Amnion

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