Variant report

Variant	rs549025097
Chromosome Location	chr11:33002785-33002786
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32998685..33000407-chr11:33002491..33003998,2	K562	blood:
2	chr11:32996304..32999169-chr11:33001880..33003438,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
5	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	nsv1040484	chr11:32951066-33093204	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1046198	chr11:32954100-33075142	Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	esv2762904	chr11:32969258-33586535	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
9	nsv1041149	chr11:32981164-33496670	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
10	nsv1053823	chr11:32981164-33533356	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
11	nsv897194	chr11:32993887-33471804	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
12	nsv975354	chr11:33001257-33006621	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32955600-33003800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:32968200-33003000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:32973000-33003200	Weak transcription	NHLF	lung
4	chr11:32973200-33008600	Weak transcription	HSMMtube	muscle
5	chr11:32975800-33003000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:32979600-33009400	Weak transcription	Stomach Mucosa	stomach
7	chr11:32980800-33003000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:32980800-33005400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:32981600-33003400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:32987000-33003000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:32990400-33008800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:32994600-33003200	Weak transcription	Fetal Heart	heart
13	chr11:32995000-33004400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:32995400-33005200	Weak transcription	NHEK	skin
15	chr11:32996000-33002800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:32996000-33003000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:32996000-33005000	Weak transcription	Fetal Stomach	stomach
18	chr11:32996000-33006000	Weak transcription	Left Ventricle	heart
19	chr11:32996000-33006200	Weak transcription	Thymus	Thymus
20	chr11:32996000-33008800	Weak transcription	Ovary	ovary
21	chr11:32996000-33009400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr11:32996000-33010000	Weak transcription	Fetal Intestine Small	intestine
23	chr11:32998000-33003200	Weak transcription	NHDF-Ad	bronchial
24	chr11:32998000-33005200	Weak transcription	Fetal Intestine Large	intestine
25	chr11:32998200-33007000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr11:32998600-33003000	Weak transcription	HMEC	breast
27	chr11:32998600-33004200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:32998600-33006800	Weak transcription	HepG2	liver
29	chr11:32998600-33007000	Weak transcription	Fetal Brain Female	brain
30	chr11:32998600-33007800	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr11:32999600-33003800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:33000000-33003000	Weak transcription	NH-A	brain
33	chr11:33000400-33003200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:33000400-33007200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:33000400-33010400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:33000600-33002800	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr11:33000600-33003000	Weak transcription	Fetal Thymus	thymus
38	chr11:33000600-33003000	Weak transcription	Hela-S3	cervix
39	chr11:33000600-33003200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr11:33000600-33003600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:33000600-33003800	Weak transcription	Fetal Muscle Leg	muscle
42	chr11:33000600-33004600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:33000600-33005800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:33000600-33006800	Weak transcription	K562	blood
45	chr11:33000600-33009600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr11:33000800-33003200	Weak transcription	Dnd41	blood
47	chr11:33000800-33005400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:33001000-33003200	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr11:33001000-33003200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:33001000-33005800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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