Variant report

Variant	rs549056406
Chromosome Location	chr11:45389680-45389681
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv467869	chr11:45389225-45415035	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv554185	chr11:45389225-45415035	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45386800-45391000	Weak transcription	Ovary	ovary
2	chr11:45388000-45389800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:45388000-45392200	Weak transcription	Brain Angular Gyrus	brain
4	chr11:45388400-45391000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:45388400-45392400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:45388400-45395800	Weak transcription	Liver	Liver
7	chr11:45388800-45392600	Weak transcription	Brain Anterior Caudate	brain
8	chr11:45389000-45390800	Weak transcription	Brain Germinal Matrix	brain
9	chr11:45389000-45391000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:45389000-45391000	Weak transcription	Fetal Brain Male	brain
11	chr11:45389000-45392200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:45389000-45392600	Weak transcription	Spleen	Spleen
13	chr11:45389400-45391000	Weak transcription	Fetal Brain Female	brain
14	chr11:45389400-45392600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:45389600-45392600	Weak transcription	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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