Variant report
| Variant | rs549263923 |
|---|---|
| Chromosome Location | chr1:179429820-179429821 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr1:179429768-179429920 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 2 | REST | chr1:179429769-179429902 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 3 | SP1 | chr1:179429736-179429982 | HepG2 | liver: | n/a | n/a |
| 4 | RXRA | chr1:179429763-179429909 | HepG2 | liver: | n/a | n/a |
| 5 | ZBTB33 | chr1:179429714-179429924 | HepG2 | liver: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| HNRNPA1P54 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1819329 | chr1:179371973-179442337 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv466217 | chr1:179371973-179477921 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv548297 | chr1:179371973-179477921 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv548298 | chr1:179376896-179436288 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | n/a |
| 5 | nsv1009624 | chr1:179423063-179459676 | Enhancers ZNF genes & repeats Weak transcription | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | n/a |
| 6 | nsv1011557 | chr1:179426390-179459460 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
