Variant report

Variant	rs549360431
Chromosome Location	chr6:14830994-14830995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14823252..14825585-chr6:14828791..14831420,2	K562	blood:
2	chr6:14829370..14831676-chr6:14847016..14849967,2	K562	blood:
3	chr6:14823162..14824752-chr6:14829920..14831830,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14826200-14832000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:14827400-14831800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:14828600-14837600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:14829000-14831000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:14829000-14831600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:14829200-14831000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:14829200-14831000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:14829200-14831600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:14829200-14831800	Weak transcription	Fetal Kidney	kidney
10	chr6:14829400-14831600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:14830200-14833000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:14830400-14831000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:14830400-14833200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:14830600-14831000	Enhancers	K562	blood
15	chr6:14830600-14831200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:14830600-14832400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:14830600-14832800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:14830600-14832800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr6:14830600-14833000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:14830800-14831400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:14830800-14831600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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