Variant report

Variant	rs549415
Chromosome Location	chr18:40460929-40460930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs16977056	0.93[EUR][1000 genomes]
rs16977074	0.92[EUR][1000 genomes]
rs17634039	0.89[EUR][1000 genomes]
rs17635858	0.93[EUR][1000 genomes]
rs17712831	0.94[EUR][1000 genomes]
rs17713884	0.93[EUR][1000 genomes]
rs17714417	0.94[EUR][1000 genomes]
rs17714864	0.92[EUR][1000 genomes]
rs1944413	0.94[EUR][1000 genomes]
rs41444547	0.94[EUR][1000 genomes]
rs488136	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4890240	0.93[EUR][1000 genomes]
rs4890241	0.94[EUR][1000 genomes]
rs4890411	0.94[EUR][1000 genomes]
rs4890412	0.94[EUR][1000 genomes]
rs4890413	0.92[EUR][1000 genomes]
rs4890414	0.92[EUR][1000 genomes]
rs4890416	0.94[EUR][1000 genomes]
rs4890417	0.91[EUR][1000 genomes]
rs531438	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs551291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61111721	0.91[EUR][1000 genomes]
rs679891	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs684446	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7230586	0.93[EUR][1000 genomes]
rs73470101	0.93[EUR][1000 genomes]
rs73471605	0.93[EUR][1000 genomes]
rs73471620	0.94[EUR][1000 genomes]
rs73471624	0.94[EUR][1000 genomes]
rs73471626	0.94[EUR][1000 genomes]
rs73471636	0.94[EUR][1000 genomes]
rs73471638	0.94[EUR][1000 genomes]
rs73471646	0.94[EUR][1000 genomes]
rs73471654	0.91[EUR][1000 genomes]
rs73471657	0.94[EUR][1000 genomes]
rs73471679	0.90[EUR][1000 genomes]
rs8084102	0.90[EUR][1000 genomes]
rs8085172	0.90[EUR][1000 genomes]
rs8087737	0.94[EUR][1000 genomes]
rs8088192	0.90[EUR][1000 genomes]
rs8089316	0.90[EUR][1000 genomes]
rs8091455	0.92[EUR][1000 genomes]
rs8091643	0.92[EUR][1000 genomes]
rs8092263	0.90[EUR][1000 genomes]
rs8093580	0.92[EUR][1000 genomes]
rs8093756	0.94[EUR][1000 genomes]
rs8094360	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv2269	chr18:40430930-40475718	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv909574	chr18:40440609-40488279	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv909575	chr18:40440609-40493500	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40445400-40468400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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