Variant report

Variant	rs8084102
Chromosome Location	chr18:40467505-40467506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10502802	0.93[CEU][hapmap];0.90[JPT][hapmap]
rs16976979	0.93[CEU][hapmap];0.90[JPT][hapmap]
rs16976993	0.93[CEU][hapmap];0.82[JPT][hapmap]
rs16977004	0.93[CEU][hapmap];0.82[JPT][hapmap]
rs16977056	1.00[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16977074	1.00[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17634039	0.93[CEU][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17634573	0.93[CEU][hapmap];0.82[JPT][hapmap]
rs17634648	0.93[CEU][hapmap];0.81[JPT][hapmap]
rs17635398	1.00[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap]
rs17635858	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17712687	0.93[CEU][hapmap];0.82[JPT][hapmap]
rs17712831	0.93[CEU][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17713111	0.93[CEU][hapmap];0.82[JPT][hapmap]
rs17713637	1.00[CEU][hapmap]
rs17713884	0.86[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17714417	1.00[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17714864	1.00[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1943946	0.93[CEU][hapmap]
rs1944413	1.00[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41444547	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs473976	1.00[CEU][hapmap]
rs482472	1.00[CEU][hapmap]
rs488136	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4890240	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4890241	1.00[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4890411	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4890412	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4890413	1.00[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4890414	1.00[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4890416	1.00[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4890417	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs531438	0.91[EUR][1000 genomes]
rs549415	0.90[EUR][1000 genomes]
rs551291	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs61111721	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs630915	0.88[CEU][hapmap]
rs632168	0.88[CEU][hapmap]
rs649056	1.00[CEU][hapmap]
rs679891	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs684446	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7230586	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7231491	0.93[CEU][hapmap];0.81[JPT][hapmap]
rs73470101	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73471605	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73471620	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73471624	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73471626	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73471636	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73471638	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73471646	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73471654	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73471657	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73471679	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8085172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8087737	1.00[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8088192	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8088908	1.00[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap]
rs8089316	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8091455	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8091643	0.87[CEU][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8092263	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8093580	1.00[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8093756	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8094360	0.93[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv2269	chr18:40430930-40475718	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv909574	chr18:40440609-40488279	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv909575	chr18:40440609-40493500	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv470418	chr18:40466757-40493501	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv576765	chr18:40466757-40545122	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40445400-40468400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:40467400-40468200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr18:40467400-40468200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr18:40467400-40468400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr18:40467400-40469000	Enhancers	HUES48 Cell Line	embryonic stem cell

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