Variant report

Variant	rs473976
Chromosome Location	chr18:40418431-40418432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10502802	0.93[CEU][hapmap];0.83[TSI][hapmap]
rs16976979	0.93[CEU][hapmap];0.83[TSI][hapmap]
rs16976993	0.93[CEU][hapmap]
rs16977004	0.93[CEU][hapmap]
rs16977056	1.00[CEU][hapmap];0.80[TSI][hapmap];0.91[EUR][1000 genomes]
rs16977074	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17634039	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs17634573	0.93[CEU][hapmap]
rs17634648	0.93[CEU][hapmap]
rs17635398	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs17635858	1.00[CEU][hapmap];0.80[TSI][hapmap];0.91[EUR][1000 genomes]
rs17712687	0.93[CEU][hapmap]
rs17712831	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs17713111	0.93[CEU][hapmap]
rs17713637	1.00[CEU][hapmap]
rs17713884	0.86[CEU][hapmap];0.91[EUR][1000 genomes]
rs17714417	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17714864	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1943946	1.00[ASW][hapmap];0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1944413	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs41444547	1.00[CEU][hapmap];0.80[TSI][hapmap];0.92[EUR][1000 genomes]
rs482472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs488136	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4890240	0.93[EUR][1000 genomes]
rs4890241	1.00[CEU][hapmap];0.83[TSI][hapmap];0.92[EUR][1000 genomes]
rs4890411	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4890412	0.92[EUR][1000 genomes]
rs4890413	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4890414	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4890416	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4890417	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs531438	0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs549415	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs551291	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61111721	0.90[EUR][1000 genomes]
rs630915	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs632168	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs649056	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs679891	0.94[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs684446	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7230586	0.91[EUR][1000 genomes]
rs7231491	0.93[CEU][hapmap]
rs73470101	0.91[EUR][1000 genomes]
rs73471605	0.91[EUR][1000 genomes]
rs73471620	0.92[EUR][1000 genomes]
rs73471624	0.92[EUR][1000 genomes]
rs73471626	0.92[EUR][1000 genomes]
rs73471636	0.92[EUR][1000 genomes]
rs73471638	0.92[EUR][1000 genomes]
rs73471646	0.92[EUR][1000 genomes]
rs73471654	0.90[EUR][1000 genomes]
rs73471657	0.92[EUR][1000 genomes]
rs73471679	0.89[EUR][1000 genomes]
rs8084102	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs8085172	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs8087737	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs8088192	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs8088908	1.00[CEU][hapmap]
rs8089316	1.00[CEU][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs8091455	0.91[EUR][1000 genomes]
rs8091643	0.86[CEU][hapmap];0.91[EUR][1000 genomes]
rs8092263	0.88[EUR][1000 genomes]
rs8093580	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs8093756	1.00[CEU][hapmap];0.83[TSI][hapmap];0.92[EUR][1000 genomes]
rs8094360	0.93[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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