Variant report

Variant	rs549565342
Chromosome Location	chr12:45977688-45977689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2751099	chr12:45960118-46043633	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv973061	chr12:45977176-45984724	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45976000-45977800	Enhancers	Duodenum Mucosa	Duodenum
2	chr12:45976000-45977800	Enhancers	Stomach Mucosa	stomach
3	chr12:45976000-45979200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:45976200-45977800	Enhancers	Fetal Intestine Large	intestine
5	chr12:45976400-45977800	Enhancers	Fetal Brain Male	brain
6	chr12:45976400-45987000	Weak transcription	Esophagus	oesophagus
7	chr12:45977000-45978200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr12:45977600-45977800	Enhancers	Fetal Brain Female	brain
9	chr12:45977600-45978200	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr12:45977600-45979200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr12:45977600-45980400	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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