Variant report

Variant	rs549599698
Chromosome Location	chr8:49738962-49738963
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890854	chr8:49738821-49838908	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49731000-49740200	Weak transcription	HSMMtube	muscle
2	chr8:49734000-49748200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:49734600-49742400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:49734600-49747800	Weak transcription	NHEK	skin
5	chr8:49736000-49739000	Enhancers	NHLF	lung
6	chr8:49736400-49739200	Enhancers	NHDF-Ad	bronchial
7	chr8:49737600-49747800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:49737800-49740400	Weak transcription	Fetal Lung	lung
9	chr8:49738400-49739400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:49738600-49739000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:49738600-49739200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr8:49738600-49739200	Enhancers	Fetal Muscle Leg	muscle
13	chr8:49738800-49739000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:49738800-49739000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:49738800-49740400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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