Variant report

Variant	rs549871869
Chromosome Location	chr9:79135024-79135025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:79059311..79060843-chr9:79133319..79135511,2	MCF-7	breast:
2	chr9:79112993..79114512-chr9:79134842..79136491,2	MCF-7	breast:
3	chr9:79073735..79076536-chr9:79134165..79136426,5	MCF-7	breast:
4	chr9:79072653..79077214-chr9:79131036..79138388,12	MCF-7	breast:
5	chr9:79091609..79094063-chr9:79133864..79136159,2	MCF-7	breast:
6	chr9:79118137..79121617-chr9:79133678..79136692,4	MCF-7	breast:
7	chr9:79134746..79136889-chr9:79256489..79258709,2	MCF-7	breast:
8	chr9:79134186..79136452-chr9:79146465..79148525,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000187210	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv893480	chr9:79115844-79222584	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv437089	chr9:79116975-79139590	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1050280	chr9:79133978-79160451	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2753141	chr9:79134434-79159993	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79093400-79142800	Weak transcription	Fetal Stomach	stomach
2	chr9:79118800-79136400	Weak transcription	Gastric	stomach
3	chr9:79118800-79145800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr9:79120400-79145200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:79126400-79140800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:79128400-79141000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:79128600-79135800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:79129200-79152000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr9:79131000-79136800	Strong transcription	Osteobl	bone
10	chr9:79131600-79141000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr9:79132200-79142600	Weak transcription	NHDF-Ad	bronchial
12	chr9:79132400-79140800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr9:79132400-79148000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr9:79132800-79135800	Weak transcription	HSMM	muscle
15	chr9:79132800-79136000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:79132800-79136400	Weak transcription	Primary B cells from cord blood	blood
17	chr9:79133800-79135800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:79134000-79137600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:79134400-79150800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:79134600-79135800	Weak transcription	NHEK	skin
21	chr9:79134600-79136200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr9:79134600-79136800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr9:79134600-79137600	Enhancers	HMEC	breast
24	chr9:79134600-79140600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr9:79134600-79152000	Weak transcription	Pancreas	Pancrea
26	chr9:79134800-79135800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr9:79134800-79136200	Weak transcription	Stomach Mucosa	stomach
28	chr9:79134800-79140600	Weak transcription	HSMMtube	muscle
29	chr9:79134800-79141000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr9:79134800-79142800	Weak transcription	Fetal Intestine Small	intestine
31	chr9:79135000-79136200	Weak transcription	NH-A	brain
32	chr9:79135000-79136400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links