The 2.0 version of rSNPBase

Variant report

Variant rs549892
Chromosome Location chr6:74324384-74324385
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:74290600-74338800 Weak transcription Ovary ovary
2 chr6:74296200-74332000 Weak transcription Placenta Amnion Placenta Amnion
3 chr6:74296400-74325800 Weak transcription iPS-15b Cell Line embryonic stem cell
4 chr6:74296400-74354800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
5 chr6:74296400-74354800 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr6:74296400-74355000 Weak transcription Fetal Brain Male brain
7 chr6:74296600-74324400 Weak transcription iPS-20b Cell Line embryonic stem cell
8 chr6:74296600-74344000 Weak transcription HUES6 Cell Line embryonic stem cell
9 chr6:74296800-74334000 Weak transcription Fetal Lung lung
10 chr6:74297000-74361800 Weak transcription GM12878-XiMat blood
11 chr6:74303400-74355000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr6:74307200-74362400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
13 chr6:74307600-74356400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr6:74308000-74340200 Weak transcription Brain Substantia Nigra brain
15 chr6:74308400-74329000 Weak transcription NHEK skin
16 chr6:74311200-74355000 Weak transcription iPS-18 Cell Line embryonic stem cell
17 chr6:74311800-74324800 Weak transcription K562 blood
18 chr6:74312600-74332400 Strong transcription Primary neutrophils fromperipheralblood blood
19 chr6:74313200-74325000 Strong transcription Fetal Intestine Large intestine
20 chr6:74313200-74331800 Strong transcription Fetal Muscle Leg muscle
21 chr6:74313800-74331200 Strong transcription Fetal Muscle Trunk muscle
22 chr6:74314200-74362800 Weak transcription Stomach Mucosa stomach
23 chr6:74314400-74346400 Weak transcription Psoas Muscle Psoas
24 chr6:74315000-74326000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr6:74315200-74348800 Weak transcription HMEC breast
26 chr6:74315400-74345200 Weak transcription ES-WA7 Cell Line embryonic stem cell
27 chr6:74315600-74362800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr6:74316000-74325400 Strong transcription Primary T cells from cord blood blood
29 chr6:74316200-74347000 Strong transcription Fetal Intestine Small intestine
30 chr6:74316400-74349200 Weak transcription HUVEC blood vessel
31 chr6:74316600-74355000 Weak transcription H9 Cell Line embryonic stem cell
32 chr6:74318400-74350000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr6:74318400-74355000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
34 chr6:74318800-74324600 Weak transcription Small Intestine intestine
35 chr6:74318800-74355200 Weak transcription Colonic Mucosa Colon
36 chr6:74319000-74341200 Weak transcription NH-A brain
37 chr6:74319400-74324400 Weak transcription Rectal Smooth Muscle rectum
38 chr6:74319400-74324400 Weak transcription Skeletal Muscle Male skeletal muscle
39 chr6:74319400-74324400 Weak transcription Dnd41 blood
40 chr6:74319600-74324400 Weak transcription Primary B cells from cord blood blood
41 chr6:74319600-74324400 Weak transcription Primary hematopoietic stem cells blood
42 chr6:74319600-74324400 Weak transcription Muscle Satellite Cultured Cells --
43 chr6:74319600-74354800 Weak transcription Primary T killer naive cells fromperipheralblood blood
44 chr6:74319800-74324400 Weak transcription Brain Hippocampus Middle brain
45 chr6:74319800-74340000 Weak transcription Colon Smooth Muscle Colon
46 chr6:74319800-74354800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
47 chr6:74320400-74340200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
48 chr6:74320600-74324600 Weak transcription A549 lung
49 chr6:74320600-74328600 Weak transcription Hela-S3 cervix
50 chr6:74320800-74331200 Strong transcription Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015