Variant report

Variant	rs549909577
Chromosome Location	chr9:24503969-24503970
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:78 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752290	chr9:24131800-24544900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2753670	chr9:24332200-24532400	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv533263	chr9:24386546-24942407	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1032395	chr9:24396046-24945219	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv613850	chr9:24424199-24539632	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv892797	chr9:24428847-24511918	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv870357	chr9:24449398-24555784	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1027072	chr9:24459843-24554174	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv2757328	chr9:24467996-24528103	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv2759682	chr9:24467996-24528103	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv892801	chr9:24488294-24671257	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv6506	chr9:24490866-24516126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
13	nsv613852	chr9:24491587-24516727	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
14	esv1792862	chr9:24493958-24519023	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
15	esv2609822	chr9:24494744-24509947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
16	nsv831529	chr9:24495736-24635767	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	esv2650857	chr9:24496274-24511019	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
18	esv1959068	chr9:24496390-24510310	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
19	nsv515135	chr9:24497668-24508286	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
20	esv1791738	chr9:24497680-24508238	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
21	esv1793338	chr9:24497680-24508238	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
22	nsv442138	chr9:24497680-24508238	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
23	nsv1034407	chr9:24497684-24517670	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
24	nsv1025544	chr9:24497684-24519672	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
25	esv2764136	chr9:24497684-24520194	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
26	nsv1020648	chr9:24498592-24517670	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
27	esv1803760	chr9:24499920-24521038	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
28	nsv1024699	chr9:24500443-24517670	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
29	nsv1030907	chr9:24500443-24519762	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
30	nsv1017960	chr9:24500443-24519939	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
31	nsv1015168	chr9:24500443-24520194	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
32	nsv1029658	chr9:24500828-24517670	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
33	nsv1034984	chr9:24500828-24519672	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
34	nsv1016068	chr9:24500828-24519762	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
35	nsv1033157	chr9:24500828-24519867	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
36	esv3482148	chr9:24501936-24519205	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
37	esv3482149	chr9:24501981-24519184	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
38	esv3482147	chr9:24502001-24519166	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
39	esv3482146	chr9:24502004-24519140	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
40	esv1797557	chr9:24502006-24518198	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
41	nsv8429	chr9:24502034-24519135	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
42	esv3482150	chr9:24502067-24519104	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
43	esv11676	chr9:24502114-24519104	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
44	esv1797499	chr9:24502283-24518398	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
45	esv1802095	chr9:24502283-24518398	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
46	esv1798398	chr9:24502483-24518198	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
47	nsv613853	chr9:24502737-24514898	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
48	esv1792348	chr9:24502737-24515111	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
49	esv1794209	chr9:24502737-24515111	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
50	esv1797874	chr9:24502737-24515111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:24495800-24504200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr9:24503000-24506000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr9:24503000-24509800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr9:24503200-24504400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:24503200-24509000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:24503200-24510000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:24503400-24504800	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links