Variant report

Variant	rs550593772
Chromosome Location	chr10:93176637-93176638
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93172008..93174146-chr10:93176470..93178792,3	K562	blood:
2	chr10:93175184..93178091-chr10:93179024..93182770,3	K562	blood:
3	chr10:93174571..93177755-chr10:93180485..93182770,3	K562	blood:
4	chr10:93169440..93173782-chr10:93175073..93182747,10	K562	blood:

Variant related genes	Relation type
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv895888	chr10:93176418-93206699	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv895889	chr10:93176418-93207971	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895890	chr10:93176418-93219246	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv895891	chr10:93176418-93269972	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93170800-93204600	Weak transcription	Gastric	stomach
2	chr10:93171000-93195000	Weak transcription	Left Ventricle	heart
3	chr10:93171600-93180400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:93171800-93180400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:93171800-93203200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:93172000-93176800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr10:93172200-93176800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr10:93172200-93195200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:93172800-93180400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:93172800-93186200	Weak transcription	Ovary	ovary
11	chr10:93173200-93194800	Weak transcription	Brain Germinal Matrix	brain
12	chr10:93173800-93176800	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr10:93174000-93176800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:93174600-93198000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:93174800-93177000	Weak transcription	Fetal Heart	heart
16	chr10:93175000-93176800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:93175000-93180400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:93175000-93180400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:93175000-93180600	Weak transcription	NHLF	lung
20	chr10:93175000-93192600	Weak transcription	Fetal Kidney	kidney
21	chr10:93175000-93204200	Weak transcription	Fetal Brain Male	brain
22	chr10:93175000-93205400	Weak transcription	Aorta	Aorta
23	chr10:93175000-93208800	Weak transcription	Adipose Nuclei	Adipose
24	chr10:93175600-93180600	Weak transcription	HMEC	breast
25	chr10:93175600-93182800	Weak transcription	HSMMtube	muscle
26	chr10:93175800-93180400	Weak transcription	NH-A	brain
27	chr10:93176000-93176800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:93176000-93176800	Enhancers	Brain Cingulate Gyrus	brain
29	chr10:93176000-93176800	Enhancers	Brain Hippocampus Middle	brain
30	chr10:93176000-93180600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:93176200-93176800	Enhancers	Brain Substantia Nigra	brain
32	chr10:93176200-93176800	Enhancers	Colon Smooth Muscle	Colon
33	chr10:93176200-93176800	Enhancers	Rectal Smooth Muscle	rectum
34	chr10:93176200-93176800	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr10:93176200-93180400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:93176200-93180400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr10:93176200-93180600	Weak transcription	HSMM	muscle
38	chr10:93176400-93176800	Enhancers	Fetal Lung	lung
39	chr10:93176400-93176800	Enhancers	Psoas Muscle	Psoas
40	chr10:93176400-93180400	Weak transcription	Osteobl	bone
41	chr10:93176400-93185800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:93176600-93176800	Enhancers	Brain Angular Gyrus	brain
43	chr10:93176600-93177000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:93176600-93177600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr10:93176600-93180400	Weak transcription	A549	lung
46	chr10:93176600-93182800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr10:93176600-93204000	Weak transcription	Brain Anterior Caudate	brain
48	chr10:93176600-93205400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr10:93176600-93212600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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