Variant report

Variant	nsv895889
Chromosome Location	chr10:93176418-93207971
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93169289..93170797-chr10:93193568..93196164,2	MCF-7	breast:
2	chr10:93168446..93170163-chr10:93194954..93197166,2	K562	blood:
3	chr10:93172033..93173602-chr10:93174597..93176611,2	MCF-7	breast:
4	chr10:93178318..93180355-chr10:93183824..93185998,3	K562	blood:
5	chr10:93171521..93173402-chr10:93179474..93182747,3	K562	blood:
6	chr10:93169438..93171176-chr10:93195078..93197545,2	MCF-7	breast:
7	chr10:93168217..93171175-chr10:93180784..93183602,4	MCF-7	breast:
8	chr10:93168791..93171692-chr10:93180790..93184478,6	MCF-7	breast:
9	chr10:93174410..93176355-chr10:93191007..93193487,2	MCF-7	breast:
10	chr10:93175184..93178091-chr10:93179024..93182770,3	K562	blood:
11	chr10:93169255..93171025-chr10:93184483..93186532,2	MCF-7	breast:
12	chr10:93168341..93170273-chr10:93191758..93194718,2	MCF-7	breast:
13	chr10:93174571..93177755-chr10:93180485..93182770,3	K562	blood:
14	chr10:93161258..93164235-chr10:93184337..93187217,2	K562	blood:
15	chr10:93190689..93192359-chr10:93195947..93197865,2	K562	blood:
16	chr10:93175184..93178091-chr10:93179024..93182770,3	K562	blood:
17	chr10:93178318..93180355-chr10:93183824..93185998,3	K562	blood:
18	chr10:93174571..93177755-chr10:93180485..93182770,3	K562	blood:
19	chr10:93172008..93174146-chr10:93176470..93178792,3	K562	blood:
20	chr10:93190689..93192359-chr10:93195947..93197865,2	K562	blood:
21	chr10:93169440..93173782-chr10:93175073..93182747,10	K562	blood:

No data

Variant related genes	Relation type
ENSG00000165338	chromatin interactions

Extended variants
information (count: 948 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:948 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12355866	chr10:93176418-93176419	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs528703361	chr10:93176541-93176542	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs548549754	chr10:93176548-93176549	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs550058045	chr10:93176575-93176576	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs111261920	chr10:93176578-93176579	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs530803062	chr10:93176622-93176623	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs550593772	chr10:93176637-93176638	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs140912661	chr10:93176663-93176664	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs570588628	chr10:93176690-93176691	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs539518000	chr10:93176845-93176846	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs553447635	chr10:93176912-93176913	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs565696445	chr10:93176964-93176965	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs534820227	chr10:93176987-93176988	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs554565634	chr10:93177003-93177004	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs190761665	chr10:93177043-93177044	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs543428454	chr10:93177062-93177063	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs369977102	chr10:93177096-93177097	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs150503265	chr10:93177132-93177133	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs200477012	chr10:93177145-93177146	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs557026179	chr10:93177176-93177177	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs7898769	chr10:93177227-93177228	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs545549088	chr10:93177276-93177277	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs559412002	chr10:93177277-93177278	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs528672016	chr10:93177283-93177284	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs542447479	chr10:93177284-93177285	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs562026930	chr10:93177323-93177324	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs181999301	chr10:93177368-93177369	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs550883825	chr10:93177369-93177370	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs564104636	chr10:93177370-93177371	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs184493925	chr10:93177376-93177377	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs374106635	chr10:93177463-93177464	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs113899704	chr10:93177525-93177526	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs567001204	chr10:93177571-93177572	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs534510064	chr10:93177693-93177694	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs548400249	chr10:93177720-93177721	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs568341878	chr10:93177752-93177753	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs537305380	chr10:93177758-93177759	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs188895056	chr10:93177768-93177769	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs139653225	chr10:93177809-93177810	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs148457995	chr10:93177870-93177871	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs12218668	chr10:93177933-93177934	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	mRNA abundance
42	rs200185627	chr10:93177943-93177944	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs561648022	chr10:93177961-93177962	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs368133711	chr10:93177964-93177965	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs571257545	chr10:93177979-93177980	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs374838690	chr10:93178113-93178114	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs181402548	chr10:93178191-93178192	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs561913866	chr10:93178195-93178196	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs34939219	chr10:93178204-93178205	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs11186563	chr10:93178340-93178341	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:426 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93170800-93204600	Weak transcription	Gastric	stomach
2	chr10:93171000-93195000	Weak transcription	Left Ventricle	heart
3	chr10:93171600-93180400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:93171800-93180400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:93171800-93203200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:93172000-93176800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr10:93172200-93176800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr10:93172200-93195200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:93172800-93180400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:93172800-93186200	Weak transcription	Ovary	ovary
11	chr10:93173200-93194800	Weak transcription	Brain Germinal Matrix	brain
12	chr10:93173800-93176800	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr10:93174000-93176600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr10:93174000-93176800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:93174200-93176600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:93174600-93198000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:93174800-93177000	Weak transcription	Fetal Heart	heart
18	chr10:93175000-93176600	Enhancers	Primary T cells from cord blood	blood
19	chr10:93175000-93176800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:93175000-93180400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:93175000-93180400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:93175000-93180600	Weak transcription	NHLF	lung
23	chr10:93175000-93192600	Weak transcription	Fetal Kidney	kidney
24	chr10:93175000-93204200	Weak transcription	Fetal Brain Male	brain
25	chr10:93175000-93205400	Weak transcription	Aorta	Aorta
26	chr10:93175000-93208800	Weak transcription	Adipose Nuclei	Adipose
27	chr10:93175600-93180600	Weak transcription	HMEC	breast
28	chr10:93175600-93182800	Weak transcription	HSMMtube	muscle
29	chr10:93175800-93180400	Weak transcription	NH-A	brain
30	chr10:93176000-93176600	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr10:93176000-93176600	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr10:93176000-93176600	Enhancers	A549	lung
33	chr10:93176000-93176800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:93176000-93176800	Enhancers	Brain Cingulate Gyrus	brain
35	chr10:93176000-93176800	Enhancers	Brain Hippocampus Middle	brain
36	chr10:93176000-93180600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:93176200-93176600	Weak transcription	Brain Angular Gyrus	brain
38	chr10:93176200-93176600	Enhancers	Brain Anterior Caudate	brain
39	chr10:93176200-93176600	Enhancers	Duodenum Mucosa	Duodenum
40	chr10:93176200-93176600	Enhancers	Fetal Stomach	stomach
41	chr10:93176200-93176600	Enhancers	Small Intestine	intestine
42	chr10:93176200-93176600	Enhancers	Stomach Mucosa	stomach
43	chr10:93176200-93176800	Enhancers	Brain Substantia Nigra	brain
44	chr10:93176200-93176800	Enhancers	Colon Smooth Muscle	Colon
45	chr10:93176200-93176800	Enhancers	Rectal Smooth Muscle	rectum
46	chr10:93176200-93176800	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr10:93176200-93180400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:93176200-93180400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr10:93176200-93180600	Weak transcription	HSMM	muscle
50	chr10:93176400-93176600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links