Variant report

Variant	rs551016842
Chromosome Location	chr18:28856541-28856542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28853800-28859400	Enhancers	HepG2	liver
2	chr18:28854200-28856600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr18:28854200-28856600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr18:28854400-28857200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr18:28854800-28856600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr18:28854800-28857200	Enhancers	Hela-S3	cervix
7	chr18:28855000-28856600	Enhancers	Stomach Mucosa	stomach
8	chr18:28855200-28858400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr18:28855200-28858400	Weak transcription	Fetal Intestine Large	intestine
10	chr18:28855400-28860800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr18:28855600-28858400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr18:28855800-28858200	Weak transcription	Fetal Intestine Small	intestine
13	chr18:28856000-28857000	Weak transcription	Gastric	stomach
14	chr18:28856000-28860400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr18:28856000-28861200	Weak transcription	Left Ventricle	heart
16	chr18:28856200-28858400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr18:28856400-28857200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr18:28856400-28858200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr18:28856400-28858400	Weak transcription	Rectal Mucosa Donor 31	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links