Variant report

Variant	rs551225973
Chromosome Location	chr15:99645428-99645429
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:99645187..99645735-chr5:79703316..79703974,2	Hela-S3	cervix:
2	chr15:99643812..99646594-chr15:99789555..99792592,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000039319	Chromatin interaction
ENSG00000103852	Chromatin interaction
ENSG00000168904	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531079	chr15:98907913-99878547	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1039575	chr15:98982045-99924685	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv869529	chr15:99416774-99903351	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv533375	chr15:99443534-99696221	Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1050982	chr15:99450004-99725825	Enhancers Strong transcription Genic enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv530685	chr15:99452377-99713365	Bivalent/Poised TSS Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv1055008	chr15:99477144-100019861	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv1045124	chr15:99504843-99847210	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	nsv1038870	chr15:99510479-99768374	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv904543	chr15:99513231-99991506	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
11	nsv533926	chr15:99519820-99997114	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
12	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
13	nsv904544	chr15:99524865-99655744	Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
14	nsv1051782	chr15:99621061-99792967	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
15	nsv916822	chr15:99621061-99878564	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
16	nsv949203	chr15:99621061-99932797	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
17	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
18	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
19	nsv570716	chr15:99629901-99916332	Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
20	esv3364884	chr15:99643929-99647227	Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	esv20801	chr15:99644218-99646022	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:99644800-99645600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr15:99644800-99646000	Active TSS	Stomach Smooth Muscle	stomach
3	chr15:99644800-99646000	Active TSS	HepG2	liver
4	chr15:99644800-99646200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:99644800-99646200	Enhancers	Liver	Liver
6	chr15:99644800-99646200	Active TSS	Hela-S3	cervix
7	chr15:99644800-99646400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:99644800-99646600	Active TSS	NHLF	lung
9	chr15:99644800-99646600	Active TSS	Osteobl	bone
10	chr15:99644800-99646800	Active TSS	Brain Angular Gyrus	brain
11	chr15:99644800-99647200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:99645000-99645600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
13	chr15:99645000-99645600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:99645000-99645800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:99645000-99645800	Active TSS	Sigmoid Colon	Sigmoid Colon
16	chr15:99645000-99645800	Active TSS	Skeletal Muscle Female	skeletal muscle
17	chr15:99645000-99646000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:99645000-99646000	Active TSS	Brain Hippocampus Middle	brain
19	chr15:99645000-99646200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr15:99645000-99646200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr15:99645000-99646200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr15:99645000-99646200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:99645000-99646200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
24	chr15:99645000-99646200	Enhancers	Placenta	Placenta
25	chr15:99645000-99646400	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr15:99645000-99646400	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
27	chr15:99645000-99646400	Active TSS	HSMMtube	muscle
28	chr15:99645000-99646600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:99645000-99646600	Flanking Active TSS	Primary hematopoietic stem cells	blood
30	chr15:99645000-99646600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr15:99645000-99646600	Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr15:99645000-99646600	Flanking Active TSS	HMEC	breast
33	chr15:99645000-99646600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
34	chr15:99645000-99646800	Flanking Bivalent TSS/Enh	Thymus	Thymus
35	chr15:99645000-99646800	Enhancers	Spleen	Spleen
36	chr15:99645000-99647000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:99645000-99647000	Active TSS	Brain Cingulate Gyrus	brain
38	chr15:99645000-99647400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr15:99645000-99647600	Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr15:99645000-99648000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
41	chr15:99645000-99648200	Active TSS	Right Atrium	heart
42	chr15:99645000-99649600	Active TSS	Rectal Smooth Muscle	rectum
43	chr15:99645200-99645600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:99645200-99645600	Flanking Active TSS	Primary T cells from cord blood	blood
45	chr15:99645200-99645600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr15:99645200-99645600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr15:99645200-99645600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr15:99645200-99645600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:99645200-99645600	Active TSS	Esophagus	oesophagus
50	chr15:99645200-99645600	Bivalent/Poised TSS	Fetal Thymus	thymus

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