Variant report

Variant	rs551316066
Chromosome Location	chr12:104062275-104062276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv865	chr12:104030102-104074864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv560038	chr12:104053420-104092996	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv525838	chr12:104059790-104063090	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv524064	chr12:104061597-104065846	Bivalent Enhancer Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104060000-104063400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr12:104060000-104063600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr12:104060000-104064000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:104060200-104063000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr12:104060200-104063000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:104060200-104063200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr12:104060200-104063200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr12:104060200-104063200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr12:104060200-104063600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr12:104061400-104063200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr12:104061600-104064000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr12:104062200-104062600	Genic enhancers	Spleen	Spleen
13	chr12:104062200-104063400	Enhancers	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links