Variant report

Variant	rs551741994
Chromosome Location	chr6:149745225-149745226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149379361..149382289-chr6:149745014..149748004,4	MCF-7	breast:
2	chr6:149745176..149748304-chr6:149748732..149751749,4	MCF-7	breast:
3	chr6:149740980..149743677-chr6:149744800..149747765,2	K562	blood:
4	chr6:149744819..149747181-chr6:149748180..149751163,2	MCF-7	breast:
5	chr6:149352125..149354322-chr6:149744702..149746498,2	MCF-7	breast:
6	chr6:149348466..149350718-chr6:149745093..149747617,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236591	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv517606	chr6:149744632-149755695	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149709600-149750200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:149732600-149745400	Weak transcription	Dnd41	blood
3	chr6:149744000-149745600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:149744000-149746800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:149744200-149745600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:149744400-149745400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:149744400-149745400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:149744400-149745400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:149744400-149745400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:149744400-149745400	Enhancers	HSMMtube	muscle
11	chr6:149744400-149745400	Flanking Active TSS	Osteobl	bone
12	chr6:149744400-149745600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr6:149744400-149745600	Enhancers	Ovary	ovary
14	chr6:149744600-149745400	Active TSS	Aorta	Aorta
15	chr6:149744600-149745400	Active TSS	Stomach Smooth Muscle	stomach
16	chr6:149744600-149745600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:149744600-149745600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:149744600-149745600	Enhancers	HSMM	muscle
19	chr6:149744600-149746400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr6:149744800-149745400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr6:149744800-149745400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:149744800-149745400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr6:149744800-149745400	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr6:149744800-149745600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr6:149744800-149745600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:149744800-149745600	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr6:149744800-149745600	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr6:149744800-149745600	Enhancers	Fetal Muscle Leg	muscle
29	chr6:149744800-149745600	Flanking Bivalent TSS/Enh	HepG2	liver
30	chr6:149744800-149745800	Enhancers	Fetal Stomach	stomach
31	chr6:149745000-149745400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:149745000-149745400	Flanking Active TSS	Liver	Liver
33	chr6:149745000-149745400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr6:149745000-149745400	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr6:149745000-149745600	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr6:149745000-149745600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:149745000-149745600	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr6:149745000-149745600	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr6:149745000-149745600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:149745000-149745600	Enhancers	Colon Smooth Muscle	Colon
41	chr6:149745200-149745400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:149745200-149745400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:149745200-149745400	Flanking Active TSS	Adipose Nuclei	Adipose
44	chr6:149745200-149745400	Enhancers	Brain Germinal Matrix	brain
45	chr6:149745200-149745400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr6:149745200-149745400	Enhancers	Duodenum Mucosa	Duodenum
47	chr6:149745200-149745400	Enhancers	Fetal Brain Female	brain
48	chr6:149745200-149745400	Enhancers	Lung	lung
49	chr6:149745200-149745400	Enhancers	Pancreas	Pancrea
50	chr6:149745200-149745400	Enhancers	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links